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Cancer Therapy: Preclinical |
Authors' Affiliations: 1 Department of Pediatric Oncology/Hematology, Erasmus Medical Center/Sophia Children's Hospital; 2 Endocrinology and 3 Hematology, Erasmus Medical Center, Rotterdam, the Netherlands; and 4 Dutch Childhood Oncology Group, the Hague, the Netherlands
Requests for reprints: Jules P.P. Meijerink, Erasmus Medical Center/Sophia Children's Hospital, Rotterdam, Dr. Molewaterplein 60, 3015 GJ, Rotterdam, the Netherlands. Phone: 31-10-408-9379; Fax: 31-10-408-9433; E-mail: j.meijerink{at}erasmusmc.nl.
| Abstract |
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Methods: In leukemic samples of 57 children, the GR gene was screened for nucleotide variations using a PCR/single-strand conformational polymorphism sequencing strategy. Data were linked to in vivo and in vitro glucocorticoid resistance.
Results: No somatic mutations were detected in the GR gene coding region, but six polymorphisms (i.e., ER22/23EK, N363S, BclI, intron mutation 16 bp upstream of exon 5, H588H, and N766N) were identified. In 67% of ALL cases, at least one minor allele of these polymorphisms was detected. Although only borderline significant, the incidence for the N363S polymorphism minor allele was higher (12% versus 6%, P = 0.06) and for the ER22/23EK minor allele lower (4% versus 7.6%, P = 0.1) than in a healthy, comparable population. The different genotypes of the polymorphisms were not related to prednisone resistance. In conclusion, polymorphisms but not somatic mutations in the GR gene coding region occur in leukemic blasts of children with ALL. Our data suggest that these genetic variations are not a major contributor for differences in cellular response to glucocorticoids in childhood ALL. The higher incidence of the N363S minor allele and the lower incidence of the ER22/23EK minor allele in our ALL population as compared with a normal population warrants further research.
Glucocorticoids enter the cell by passive diffusion and bind to the intracellular glucocorticoid receptor (GR). The glucocorticoid-GR complex is translocated to the nucleus, where it triggers transactivation as well as transrepression of glucocorticoid-responsive genes. The transactivation and/or transrepression of downstream genes finally result in the induction of programmed cell death (apoptosis). The presence of point mutations or particular polymorphisms in the GR gene may lead to an impaired formation of the glucocorticoid-GR complex or alter the transactivation or transrepression process.
In the last decade, patients with generalized glucocorticoid resistance syndromes were described, which were linked to somatic mutations in the GR gene and which were localized within specific domains of the GR gene (Fig. 1A and B; refs. 610). Besides somatic mutations, polymorphisms within the GR gene have been described in healthy populations ( Table 1), of which some were associated with altered responsiveness to glucocorticoid. The ER22/23EK polymorphism results in decreased sensitivity for glucocorticoid (11), whereas two other polymorphisms (N363S and BclI) have been associated with an increased glucocorticoids sensitivity as measured with a dexamethasone suppression test (i.e., the response of the serum cortisol level upon 1 mg dexamethasone given orally the evening before) in asymptomatic healthy adults (1214). The clinical relevance of the increased sensitivity for glucocorticoids in relation to the N363S polymorphism remains controversial (1519), but the BclI polymorphism has been related to a higher body mass index, abdominal obesity, and higher systolic blood pressure (12, 20, 21). Besides these three polymorphisms, various other polymorphisms have been described with no or an unknown relationship to glucocorticoid responsiveness (19, 2224).
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In the present study, we analyzed the incidence of genetic variations in the coding region of the GR gene and the BclI restriction site and whether such genetic variations are related to in vitro or in vivo glucocorticoid resistance in childhood ALL.
| Materials and Methods |
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1,000 blasts/µL (29). Patient material was taken before initial therapy. To differentiate between (leukemic) somatic mutations and polymorphisms, we also collected normal peripheral blood mononuclear cells of the same patients at complete remission. The study has been approved by the medical ethical committee of the Erasmus Medical Center Rotterdam and written informed consent was obtained from the patients and/or their parents or guardians as appropriate. The mononuclear cell fraction was separated by Lymphoprep density gradient centrifugation (density, 1.077 g/mL; Nycomed Pharma, Oslo, Norway), and when necessary, nonleukemic cells were depleted by immunomagnetic beads to purify the samples to >90% of leukemic cells. DNA isolation. DNA was extracted using Trizol reagent (Life Technologies (Breda, the Netherlands), according to the protocol supplied by the manufacturer with some modifications. An additional protein degradation step was done using Proteinase K (1 mg/mL). DNA was purified in two separate steps. In the first step, DNA was precipitated using 0.5 mol/L NaCl, 60 µg of glycogen, and 2.5 volumes of 70% ethanol followed by an additional phenol extraction and a chloroform extraction. In the second purification step, DNA was precipitated in 0.3 mol/L NaAc and 2 volumes of ethanol 70%.
PCR amplification. One hundred nanograms of genomic DNA were used to amplify the GR gene using the primers as described in Table 2. The Genbank accession no. AC091925 was used as a reference GR sequence to which sequence variations were compared. For the exons 3 to 9-
, the primers were located in intronic DNA directly flanking these exons. Because exon 2 was too large to be amplified in a single PCR, five overlapping PCRs were developed to cover exon 2 (Table 2). The PCR reaction was done in 100 µL 1x PCR buffer II (Applied Biosystems, Foster City, CA), 3 mmol/L MgCl2 (except exon 2-4: 1.5 mmol/L), 250 nmol/L of deoxynucleotide triphosphates (10 µmol/µL, Amersham Biosciences, Freiburg, Germany), 3 units of AmpliTaq Gold (5 units/µL, Applied Biosystems), 100 ng DNA, and 400 nmol/L of the forward and reverse primers. Before amplification, DNA was denatured and AmpliTaq Gold activated for 9 minutes at 95°C followed by 40 cycles of denaturation at 95°C for 30 seconds, annealing at 55°C (except exons 2-4: 59°C) for 30 seconds, extension at 72°C for 60 seconds, and a final period of extension at 72°C for 10 minutes.
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Sequencing. PCR products displaying an abnormal migration pattern on single-strand conformational polymorphism (SSCP) gels were sequenced. PCR products were purified using the QIAquick PCR purification kit. (Qiagen, Leusden, the Netherlands) The BigDye Terminator V1.1 cycle sequencing kit (Applied Biosystems) was used according to the protocol as provided by the manufacturer. Sequencing primers used were the same as used in the PCR reaction (Table 2), although for some reactions separate sequencing primers were developed (Table 2). The products of the sequencing reaction were analyzed using the ABI Prism 310 Genetic Analyzer (Applied Biosystems).
Taqman analysis of the BclI polymorphism. Because the BclI polymorphism is located in intron 2 and is not covered by exonic PCR amplification reactions, a separate analysis was done as described previously (12). Briefly, an allelic discrimination using Taqman chemistry on an ABI PRISM 7700 sequence detector (Applied Biosystems) was used. Primers and probe as depicted in Table 2 were used at concentrations of 400 and 50 nmol/L, respectively.
3-(4,5-Dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide assay. In vitro drug cytotoxicity was assessed with the 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) assay as described earlier. (2, 5, 30) Briefly, patient blasts were cultured with or without prednisolone disodiumphosphate in a concentration range between 0.06 and 250 µg/mL. At day 4, MTT is added, which can only be reduced into formazan by viable cells. The reduced product was measured spectrophotometrically at 562 nm. The leukemic cell survival is calculated by (absorbance drug-treated well / absorbance control wells without drug) x 100%. The LC50 value represents the concentration of the drug at which 50% of the cells are killed and is used as measure of in vitro drug cytotoxicity. In vitro prednisolone sensitivity was determined as sensitive (LC50
0.1 µg/mL), intermediate (LC50 = 0.1-150 µg/mL), or resistant (LC50
150 µg/mL), as has previously been described to be of prognostic value (5, 31).
Statistics. The
2 test for trend and the Mann-Whitney test with correction for tied ranks were used to test for a difference in genotype distribution for the polymorphisms between the study population and a healthy population. A logistic regression analysis, the
2 test for trend, and the Mann-Whitney test with correction for tied ranks were used to test for a relationship between the different genotypes (wild type, heterozygous, or homozygous) and in vivo or in vitro glucocorticoid resistance. A power analysis yields that with P < 0.05, a standardized difference of 0.85 in such a study (42 in vivo prednisone sensitive and 15 resistant) is detected with 0.8 power. This allows to draw conclusions on large differences between sensitive and resistant patients, which is what we expect when glucocorticoid resistance is determined by genetic variations. The probability of event-free survival was calculated using the Kaplan-Meier method and a correlation between different genotypes and probability of event-free survival was analyzed using the log-rank test.
| Results |
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In 38 of 57 patients (67%), at least one minor allele of the polymorphisms was found. In two patients we found four minor alleles, in 11 patients three minor alleles, in nine patients two minor alleles, and in 16 patients one minor allele. In 19 patients, no abnormalities were detected. (Note that only 53 patients were screened for the BclI polymorphism and only 56 patients were screened for the N766N polymorphism).
The genotype distribution of the polymorphisms in our cohort was comparable to the incidence as reported in literature, except for the N363S and ER22/23EK polymorphisms (Fig. 1C). The minor allele of the N363S polymorphism was observed in a higher percentage of ALL patients (12%) and the minor allele of ER22/23EK polymorphism was found in only 4% of the patients as compared with 6% and 7.4% respectively in the normal, healthy population from the same topographical region. The test to compare the incidence in the study population and the incidence as reported in the literature yielded borderline significance (P = 0.06 and P = 0.1).
The relationship between the polymorphisms and in vivo and in vitro glucocorticoid resistance is shown in Table 3. We analyzed a possible relationship between glucocorticoid resistance versus wild type, heterozygote, and homozygote as well as a possible relationship between glucocorticoid resistance versus wild type and one minor allele (i.e., heterozygote or homozygote). None of the polymorphisms seemed correlated with in vivo prednisone response (n = 57) nor with in vitro prednisolone resistance (n = 40; Table 4). The presence of two minor alleles in one patient (e.g., N363S and BclI) did not correlate with in vivo or in vitro glucocorticoid resistance as well. In this small cohort of 57 patients, we did not find an association between the presence of polymorphisms and event-free survival (data not shown).
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| Discussion |
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To induce apoptosis in glucocorticoid-sensitive cells, glucocorticoids have to bind the intracellular GR. This results in transactivation and/or transrepression of glucocorticoid-responding genes, which eventually results in apoptosis in glucocorticoid-sensitive patients. Although glucocorticoid resistance is an important cause of treatment failure, little is known about possible mechanisms of glucocorticoid resistance in childhood ALL (34). In this study, we tested the hypothesis that glucocorticoid resistance is the result of genetic variations within the GR gene, which might alter the glucocorticoid-binding capacity or transactivation or transrepression of glucocorticoid responding genes.
Analysis of the coding region of the GR gene for sequence alterations in 57 patients revealed six different genetic variations. These genetic variations were identical to previously reported polymorphisms (i.e., ER22/23EK, N363S, BclI, intron mutation 16 bp upstream of exon 5, H588H, and N766N; Fig. 1). No somatic mutations that might result in altered glucocorticoid sensitivity were found in these 57 ALL cases. In two studies, somatic mutations were found in cell lines from ALL patients. A L753F somatic mutation was shown to be present in CCRF-CEM cells and original ALL cells from which the cell line was established (27). As the L753F somatic mutation was found in both the glucocorticoid sensitive and resistant clones of the CCRF-CEM cell line, it probably has no correlation with glucocorticoid sensitivity (25, 26). The C643R somatic mutation was found in a cell line established from a Japanese patient with ALL (P30/OHK). It is not clear whether this mutation was also present in the original cells or that it was acquired during tissue culture. Transfection studies showed that the C643R allele had no transcriptional activity, but no evidence was given whether this mutation was related to glucocorticoid resistance in ALL cells (28). All together, these data suggest that somatic mutations do not occur frequently and can not explain resistance to glucocorticoid in pediatric ALL. In contrast to somatic mutations, we detected several polymorphisms of the GR gene in children with ALL. Confirmation of the same genetic variations in normal peripheral blood mononuclear cells obtained during clinical remission confirmed that the variations indeed were polymorphisms. Other polymorphisms of the GR gene as reported in the literature with a low incidence were not detected in our population nor did we detect any thus far unreported genetic variations. Although we can not exclude that these polymorphisms with low incidence were missed by our PCR/SSCP, we had optimized our strategy to achieve a high detection limit; thus, it is reasonable to assume that these low-incidence polymorphisms were absent in our population.
The genotype distribution of the polymorphisms BclI, N766N, and the intron mutation upstream of exon 5 was the same as reported in the literature. However, the minor allele of the ER22/23EK polymorphism was found in a lower percentage than in a healthy population of the same ethnicity (4% versus 7.4%, respectively), whereas the minor allele of N363S was found in a higher percentage as compared with the healthy population of the same ethnicity (12% versus 6%, respectively; ref. 13). Because the number of patients in our study is small and no statistical significance was reached (P = 0.1 and P = 0.06, respectively), the altered frequency of both polymorphisms warrants further evaluation in a larger cohort of patients. The minor allele of the H588H polymorphism was found in one of our patients. It was reported before in cell lines that originate from four Japanese individuals (24). In a previous Dutch study including a large healthy population, this polymorphism was not reported (22).
In the literature, the clinically most relevant polymorphism of the GR gene is the BclI polymorphism (12). Previously, it was detected with a RFLP-based technique, but recently, the exact mutation was found to be a C/G single nucleotide polymorphism in intron 2, 646 bp downstream from exon 2 for which a specific real-time PCR approach has been developed (12, 35). It is associated with increased response to a dexamethasone suppression test and with increased (abdominal) obesity, body mass index, and blood pressure (20, 36, 37). However, in our population, the BclI polymorphism was not correlated with in vivo or in vitro glucocorticoid sensitivity. In addition, for the other five polymorphisms, no correlation with in vivo or in vitro glucocorticoid response was found.
In conclusion, polymorphisms but not somatic mutations in the coding region of the GR gene occur in leukemic blasts of children with ALL. Our data suggest that genetic variations in the GR gene are not a major contributor for differences in cellular response to glucocorticoid in childhood ALL.
| Acknowledgments |
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| Footnotes |
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Received 10/14/04; revised 5/23/05; accepted 5/27/05.
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