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Human Cancer Biology |
Authors' Affiliations: 1 Molecular and Cancer Research Unit, HMRO, and 2 Department of Surgery, Graduate School of Medicine, Kyoto University, Kyoto, Japan
Requests for reprints: Hajime Kubo, Molecular and Cancer Research Unit, HMRO, Graduate School of Medicine, Kyoto University, Yoshida-Konoe-cho, Sakyo-ku, Kyoto 606-8501, Japan. Phone: 81-75-753-9307; Fax: 81-75-753-9311; E-mail: kuboflt{at}kuhp.kyoto-u.ac.jp.
| Abstract |
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Experimental Design: To screen prox1 as a potential tumor suppressor gene, its expression was analyzed in HCC cell lines and in human HCC tissues. Its growth-conferring abilities were assessed by transiently overexpressing Prox1 in HCC cell lines and by knocking down its expression by RNA interference.
Results: We found that there was a significant correlation between Prox1 expression and the differentiation scores of the tumors. Subsequently, we also showed that low expression of Prox1 in tumors was closely associated with a poor prognosis. The specific knockdown of Prox1 by RNA interference strongly accelerated in vitro cell growth, whereas the overexpression of Prox1 greatly suppressed the growth.
Conclusions: Our results suggest that Prox1 is involved in the differentiation and progression of HCC, and thus it may be a candidate for the development of novel diagnostic and therapeutic strategies for HCC.
Homeobox proteins are known to play essential roles in the determination of cell fate and the development of the body plan. The roles of homeobox proteins have been documented individually, although these total physiologic roles remain unclear. Several homeobox genes are the targets of chromosomal translocations in malignancies and are thought to be potential oncogenes. Deregulation of such a homeobox gene may give rise to tumorigenesis in target organ. The homeobox gene prox1 is related to the Drosophila prospero gene, which mediates cell fate decisions of neuroblasts (5). Prox1 is the master gene of lymphangiogenesis but it is also expressed in the developing central nervous system, lens-secreting cone cells, R7 photoreceptors, and midgut (68). Furthermore, the expression is detected in embryonic hepatoblasts and in adult hepatocytes (9). Analysis of prox1-null mice showed its potential roles in lens fiber elongation (10), development of the lymphatic systems (11), and hepatocyte migration (12). They also showed a 70% reduction in liver size due to reduced proliferation of hepatoblasts. One of these studies suggested that inactivation of Prox1 caused abnormal cellular proliferation and down-regulated expression of the cell cycle inhibitors (10). Interestingly, a report showed that Prox1 controlled progenitor cell proliferation and horizontal cell genesis in mammalian retina from the analysis of the gene-targeting mice (13). In some situations, Prox1 seems to suppress cell proliferation, probably by regulating the cell cycle, and thus prox1 may have a role in tumorigenesis. In fact, mutations and aberrant DNA methylation of prox1 have been observed in hematologic malignancies (14).
These information prompted us to screen prox1 as a potential tumor suppressor gene. Hepatoma cells are similar to embryonic hepatoblasts to a certain extent because they both proliferate and invade the surrounding tissue, and Prox1 could be the driving force behind these cellular activities. Is there a relationship between HCC and Prox1? In this study, we report the down-regulation of Prox1 in HCC, and investigate its involvement in human hepatocellular carcinogenesis.
| Materials and Methods |
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Cancerous and corresponding noncancerous frozen tissues and optimum cutting temperatureembedded tissues obtained by surgical resection of 52 cases of HCC were retrieved from the 1998-2003 surgical pathology files of Kyoto University Hospital (see Table 1 ). All samples were obtained with informed consent and their use was approved by the ethics committee of the institution.
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Sequencing. The reverse transcription-PCR (RT-PCR) products obtained from the 30 samples of human HCC tissues were sequenced as a population without cloning. The following four sets of PCR primers to cover the entire coding region of prox1 gene were used for sequencing: set 1 (forward 5'-ATGCCTGACCATGACAGCAC-3', reverse 5'-TTTCATTGCCCCTTAATGCC-3'); set 2 (forward 5'-TAATTCGGGGTATGAGCCAT-3', reverse 5'-TCTGGCCTGGGGGATCTG-3'); set 3 (forward 5'-CAGGTTCCTCAGGTCTTC-3', reverse 5'-CTTCCTGCATTGCACTTCC-3'); and set 4 (forward 5'-CATCTCACCACCTGAGCC-3', reverse 5'-CTACTCATGAAGCAGCTCTTG-3'). The sequencing analysis was done with ABI PRISM 3100 Avant Genetic Analyzer and ABI PRISM DNA Sequencing Analysis software (Applied Biosystems, Foster City, CA) according to the instructions of the manufacturer.
Real-time PCR. The primer set for Prox1 was as follows: forward 5'-AAAGCAAAGCTCATGTTTTTTTATACC-3' and reverse 5'-GTAAAACTCACGGAAATTGCTAAACC-3'. The probe for Prox1 was 5'-CTTCTCCGACGTAAAGTTCAACAGATGCATTACC-3'. GAPDH was used as an endogenous control using commercially available primers (Applied Biosystems). Real-time PCR was done in triplicate using a thermal cycler ABI PRISM 7700 (Perkin-Elmer Applied Biosystems, Foster City, CA) in accordance to the instructions of the manufacturer. Standard curves for templates of prox1 and GAPDH were generated by serial dilution of the PCR products. The Ct values obtained for Prox1 were normalized by the corresponding Ct values of GAPDH.
Immunohistochemistry. Cryosections of 5-µm thickness were prepared and fixed in 4% paraformaldehyde. Endogenous peroxidase was quenched with 3% H2O2 in methanol for 10 minutes, and they were blocked with TNB buffer (TSA Biotin system kit/NEL700, Perkin-Elmer) for 30 minutes. Antihuman prox1 antibody (Relia Tech GmbH, Braunschweig, Germany) was diluted 1:100 and incubated with the sections at 4°C for 16 hours. The slides were washed thrice with TNT buffer (Perkin-Elmer) and incubated with biotin-conjugated antirabbit antibody (1:1,000; DakoCytomation, Glostrup, Denmark) at room temperature for 30 minutes. TSA Biotin System (Perkin-Elmer) was used to enhance staining, and peroxidase activity was envisioned with diaminobenzidine kit (DakoCytomation). A subset of the sections was counterstained with hematoxylin. All the sections were mounted in Entellan (Merck, Darmstadt, Germany).
Survival rate. The differential expression of Prox1 was divided into two groups (high versus low) according to the value of real-time PCR. The cutoff value was set up at 5.5 (
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RNA interference. Two target sequences were assigned at different locations of human prox1 mRNA, designed to match nonconserved sequences. siRNAs were 21-nucleotide-long double-stranded RNA oligos with a two-nucleotide overhang at the 3' end: siRNA-1 (sense 5'-GGGAGGCAUGGAUAUGUUATT-3', antisense 5'-UAACAUAUCCAUGCCUCCCAT-3') and siRNA-2 (sense 5'-CCUUAUUCGGGAAGUGCAATT-3', antisense 5'-UUGCACUUCCCGAAUAAGGTG-3'). Negative control siRNA was purchased from Qiagen (Hilden, Germany), which had no known homology with any mammalian genes (sense 5'-UUCUCCGAACGUGUCACGUTT-3', antisense 5'-ACGUGACACGUUCGGAGAATT-3'). Cell cultures of 50% to 80% confluence were prepared in a six-well plate and siRNA was introduced using Lipofectamine 2000 (Invitrogen) according to the recommended protocol. In brief, 1.67-µL siRNA (1 µg/µL solution) was incubated with 3.33-µL Lipofectamine in 133-µL Optimem (Invitrogen) for 30 minutes; the mixture was then added to the cells in a final volume of 0.8 mL.
3-(4,5-Dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide assay. Cell numbers were determined by the 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) dye uptake method (Cell Titer 96 Aqueous One Solution Reagent, Promega, Madison, WI). In brief, the cells were incubated in a six-well plate in a final volume of 1-mL medium including 1/5 MTT solution at 37°C. After 1-hour incubation, the absorbance value was measured using a plate reader (ARVO 1420, Bio-Rad, Hercules, CA) at 490 nm for 0.1 second. Triplicate wells were assayed and SDs were determined.
Western blotting. Whole-cell extracts were prepared in radioimmunoprecipitation assay lysis buffer [50 mmol/L Tris-HCl (pH 8.0), 150 mmol/L NaCl, 0.1% SDS, 0.5% sodium deoxycholate, 1% NP40] and protein concentration was measured with Coomassie Plus Protein Assay Kit (Pierce, Rockford, IL). Extracts (10-20 µg) were resolved on 12.5% SDS-PAGE gel. After electrophoresis, the proteins were electrotransferred to a nitrocellulose membrane, blocked with 5% nonfat milk, and probed with antibodies against Prox1 (1:200) or ß-actin (1:10,000) for 1 hour. The blot was washed with TBS containing 0.05% Tween 20 and exposed to horseradish peroxidaseconjugated secondary antibodies for 1 hour, and finally detected by the enhanced chemiluminescence method (Western Lighting Chemiluminescence Reagent Plus, Perkin-Elmer).
Tet-off system. pTet-off regulator plasmid, which contains the tTA transactivator gene under the control of the cytomegalovirus promoter/enhancer, pTRE2hyg response plasmid, which contains a multicloning site immediately downstream of the Tet response element (TRE), and pTRE2hyg-Luc plasmid, which contains the gene encoding firefly luciferase cloned into the pTRE2hyg, were purchased from BD Biosciences Clontech (Palo Alto, CA). Human prox1 was subcloned and inserted into the Mul1-EcoRV site of pTRE2hyg plasmid to create the pTRE2hyg-prox1 mammalian expression plasmid. The tetracycline transactivator system was employed to generate Hep3B and Huh7 cell lines that express Prox1 and the luciferase protein in a regulated manner. Hep3B and Huh7 were transfected with pTet-off regulator plasmid using Lipofectamine 2000 (Invitrogen) as previously described. Clones were then selected with 400 µg/mL (Hep3B) or 800 µg/mL (Huh7) of G418 for 4 weeks, and the effect of the transfection was analyzed by luciferase assay system (Promega). Briefly, the clones were harvested 48 hours after transfection of pTRE2hyg-Luc plasmid and cells were lysed in Passive Lysis Buffer (Promega) as indicated by the manufacturer. Insoluble material was pelleted by centrifugation for 1 minute at 13,000 x rpm. Twenty microliters of the supernatant were mixed with 200 µL of luciferin reagent. The light emitted was measured in a luminometer (ARVO 1420, Bio-Rad) comparing the light in the absence or presence of 1 µg/mL doxycycline to select the most effective clone (Hep3B-pTet-off, Huh7-pTet-off).
Loss of heterozygosity assessment. Genomic DNA was extracted from a total of 30 primary human HCCs and corresponding noncancerous liver tissues with a QIAamp Tissue Kit (Qiagen) after proteinase K digestion. Eight microsatellite markers (Supplemental data 1), which were mapped on human chromosome 1 (1996 Genethon Microsatellite Map, GenLink), were used for loss of heterozygosity (LOH) analysis. Each primer pair was fluorescent dye labeled. The PCR mixture contained >0 ng of genomic DNA, 200 µmol/L of each deoxynucleotide triphosphate, 0.25 units of Ex Taq polymerase, 0.4 µmol/L of each primer, and 10x ExTaq Buffer (TaKaRa Bio) in a final volume of 10 µL. After denaturation at 94°C for 5 minutes, DNA amplification was done for 30 cycles of 94°C for 30 seconds, 55°C for 30 seconds, and 72°C for 30 seconds, with a final extension at 72°C for 7 minutes. Samples were loaded on a 6% polyacrylamide 8 mol/L urea gel and run for 2.5 hours in a 377XL Automated Sequencer (Applied Biosystems, Chuo-ku, Tokyo, Japan). The data were collected automatically and analyzed with the GeneScan software and Genotyper software (Applied Biosystems). LOH was quantitatively assessed by calculating the LOH index, which was defined as the allele ratio in the normal tissue divided by the allele ratio in the tumor tissue. The allele ratio was calculated as the peak height of the smaller allele divided by the peak height of the larger allele. If the LOH index was <0.5 or >2.0, we defined that the case was LOH.
| Results |
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Genetic analyses of prox1 gene in HCC. Molecular characterization of tumors caused by tumor suppressor genes revealed that the second mutational "hit" usually involved large portions of the particular chromosome, which could be detected by LOH analyses. Genetic events that result in LOH play a major role in the development of tumors, as they convert a heterozygous configuration of a tumor suppressor gene into homozygosity. To investigate whether any loss could be observed in the vicinity of prox1, we carried out LOH analyses in 30 HCC cases using eight polymorphic markers on chromosome 1 (Supplemental data 1). The mean heterozygosity of the microsatellite markers was 75%. The frequency of LOH for each marker in the tumors ranged from 0% to 22.2%, with an average of 8.0 ± 6.8% (mean ± SD). Although 12 tumors exhibited LOH at one or more locus, none showed loss at the two microsatellite markers F (D1S213) and G (D1S2811) spanning the prox1 region (1q32.2-32.3). Therefore, LOH may have no important effect on the suppression of Prox1 in HCC.
To then investigate whether mutations exist in the coding region of prox1, cDNAs derived from 30 human HCCs were amplified by PCR and sequenced as a population. We compared the sequences with the published human prox1 sequence but could not find any mutations in all 30 samples. Therefore, the mutation of prox1 gene is not essential for liver carcinogenesis.
Knockdown of prox1 expression by RNA interference promotes cell proliferation in Hep3B and Huh7. Previous data suggested that Prox1 played important roles in control of proliferation and differentiation (13). To more rigorously explore this possibility, we employed two sets of siRNA to knock down endogenous Prox1 expression in two HCC cell lines, Hep3B and Huh7, which had shown the highest expression of prox1. To confirm gene-specific knockdown, we used a negative control siRNA, which had no known homology with mammalian genes. By real-time PCR, we found that the level of prox1 mRNA was reduced to 2.4% to 41.0% in the cells treated with both siRNAs as compared with control siRNAtreated cells (Fig. 4A ). The maximal knockdown effect was observed at 48 hours after transfection for both siRNAs. To corroborate the RT-PCR analysis, we carried out a Western blot analysis to detect Prox1 protein at 48, 72, and 96 hours after siRNA transfection. We showed a significant decrease of Prox1 protein as compared with control siRNAtreated cells at all time points taken, and the most marked effect was found at 72 hours after siRNA (Fig. 4B). Taken together, these data showed that Prox1 expression was efficiently knocked down in the cells by RNAi technique.
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30% compared with the control siRNAtreated cells (P = 0.019, between siRNA1 and control siRNA; P = 0.025, between siRNA2 and control siRNA; P = 0.019, between siRNA1 and control siRNA; P = 0.025, between siRNA2 and control siRNA; Fig. 4D). Furthermore, the two siRNAs affected the cell proliferation to the same extent. On the contrary, there was no significant difference between siRNA- and control siRNAtreated HeLa cells (Fig. 4E), in which there is hardly detectable endogenous Prox1 expression (Fig. 4C). In addition, a similar result was obtained using Huh7. After monitoring cell growth for 72 hours at 24-hour intervals, we showed that knockdown of Prox1 protein significantly promoted cell proliferation in the cells (Fig. 4F). The effect of prox1 overexpression on the proliferation of HCC cell lines. To explore the biological function of Prox1, we next investigated the effects of overexpression of Prox1 on cell proliferation. pTRE2hyg-prox1 and pTRE2hyg-Luc plasmids were transfected into Hep3B-pTet-off cells and incubated with doxycycline. After 24 hours, the transfected cells were counted and plated onto six-well plates at 1 x 105 per well with and without doxycycline. To test whether the Tet-off system was effective, Western blot analysis was carried out on days 3 and 5. The presence of doxycycline inhibited the expression of Prox1 protein at both time points tested (Fig. 5A ). Cell growth was monitored by MTT assay at days 1, 3, and 5 after the passage (Fig. 5B). The assay showed that overexpression of Prox1 suppressed cell proliferation by >30%, whereas that of the control gene luciferase had no effect.
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| Discussion |
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In that case, how is prox1 gene regulated? A previous study reported that the expression of the prox1 gene was silenced in various hematologic cell lines, and bisulfate sequencing analysis revealed that DNA methylation of intron 1 might cause this silencing and other cell lines had DNA mutations in the prox1 gene (14). To address the mechanism of down-regulation of prox1 gene expression in HCC, hepatoma cell lines (Hep3B and Huh7) and HeLa cells were treated with the demethylating agent 5-azacytidine (0, 0.02, 0.5, and 1 µmol/L). However, this had no effect on restoring prox1 gene expression in the three cell lines (data not shown). Subsequently, we carried out mutation screening of prox1 mRNA and LOH analyses of prox1 in 30 HCC tumors, but we could not find any mutations or LOH in these samples. Previously, it was reported that a high frequency of LOH was not observed at the chromosome arm 1q, which is the location of prox1 gene (15). Our results are in good agreement with theirs. However, the mechanism of down-regulation of prox1 gene expression remains undisclosed. We surmise that there is an unknown mechanism that regulates the prox1 gene.
In attempting to determine the possibility of prox1 as a tumor suppressor gene, we employed the RNAi technique for knockdown of its expression and analyzed its phenotype. We found that a transient knockdown of prox1 significantly accelerated the growth of HCC cell lines in vitro, and we also showed that overexpression of prox1 resulted in suppression of cell proliferation. These results suggest that overexpression of Prox1 can strongly inhibit tumorigenesis, and our findings indicate that Prox1 is an attractive candidate for a diagnostic and therapeutic target. We have recently found that Prox1 overexpression conferred a slower growth phenotype to some cancer cell lines and enabled them to form much smaller tumors in nude mice.3
It remains to be determined how the reduction of Prox1 expression contributes to the differentiation of HCC and influences the survival of patients with HCC. Because of the proliferation and/or differentiation activity in HCC cells, decreased Prox1 expression may enhance the unregulated growth or recurrence of HCC cells.
In summary, we have presented evidence of Prox1 expression in malignant hepatoma cell lines and in HCC specimens. Furthermore, we have shown that decreased Prox1 levels are correlated with the progression of differentiation of HCC and predict poor prognosis for patients with HCC after surgery. Our findings indicate that prox1 may be a novel candidate gene for the development of diagnosis and therapeutic strategies for HCC.
| Footnotes |
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The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked advertisement in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
Note: Supplementary data for this article are available at Clinical Cancer Research Online (http://clincancerres.aacrjournals.org/).
M. Shimoda and M. Takahashi contributed equally to this work.
Received 3/22/06; revised 5/19/06; accepted 6/30/06.
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