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Human Cancer Biology |
Authors' Affiliations: 1 Laboratory of Molecular Medicine and 2 Promotion of Genome-Based Medicine Project, Human Genome Center, Institute of Medical Science, The University of Tokyo, Tokyo, Japan and 3 Department of Gastroenterological Surgery, Graduate School of Medicine, Kyoto University, Kyoto, Japan
Requests for reprints: Yoichi Furukawa, Laboratory of Molecular Medicine, Human Genome Center, Institute of Medical Science, The University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan. Phone: 81-3-5449-5373; Fax: 81-3-5449-5124; E-mail: furukawa{at}ims.u-tokyo.ac.jp.
| Abstract |
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Results: We showed in this article that RASGEF1A protein has a guanine nucleotide exchange activity to K-RAS, H-RAS, and N-RAS proteins in vitro. Consistently, exogenous RASGEF1A expression increased the activity of Ras. In addition, suppression of RASGEF1A by small interfering RNA retarded the growth of cholangiocarcinoma cells. Interestingly, COS7 cells expressing exogenous RASGEF1A showed enhanced cellular motility in Transwell and wound-healing assays.
Conclusions: These data suggest that elevated expression of RASGEF1A may play an essential role for proliferation and progression of ICC. Our data indicate that RASGEF1A may be a promising therapeutic target for the majority of ICCs.
Molecular studies on ICC have disclosed involvement of multiple genetic alterations in cholangiocarcinogenesis. Mutations in K-RAS and p53 were detected in 20% to 50% and 20% to 37% of ICCs, respectively (1012). The Ras family of small GTPases plays a key role in integrating and transmitting signals from cell surface receptors to downstream effector molecules. Mutation in K-RAS results in constitutive activation of its downstream signaling pathway. Activation of Ras proteins promotes oncogenesis by disturbing a multitude of cellular processes, such as gene expression, cell cycle progression, and cell proliferation as well as cell survival and cell migration (13).
Ras proteins are interconvertible between an active GTP-bound form and an inactive GDP-bound form (14). Their activities are modulated by regulatory proteins that stimulate GDP/GTP exchange [guanine nucleotide exchange factor (GEF) proteins] and GTP hydrolysis (GTPase-activating proteins). On activation by extracellular stimuli, GEFs promote the release of GDP from Ras, permitting GTP to associate with Ras. This GTP-bound Ras forms an active conformation and mediates signals to downstream effector proteins, such as Raf, phosphatidylinositol 3-kinase (PI3K), and RalGDS (15, 16). Although several Ras family GTPases have been identified, a limited number of Ras GEFs have been studied [e.g., SOS1, SOS2, GRF, and GRP for Ras; SmgGDS, C3G, CalDAG1, and Epac for Rap1; and RalGDS family members for Ral (1621)].
To uncover precise mechanisms of ICC and identify novel molecular targets for the treatment, we earlier analyzed genome-wide expression profiles of genes in 25 ICCs (22). Among the genes with elevated expression in ICC, we focused in this study on a gene, RASGEF1A (RasGEF domain family, member 1A), encoding a putative guanyl nucleotide exchange factor for Ras because Ras activation is involved in a wide range of human tumors. We report here that RASGEF1A has a guanine nucleotide exchange activity to K-RAS, H-RAS, and N-RAS and that RASGEF1A may serve for a novel therapeutic target for ICCs.
| Materials and Methods |
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RNA preparation and semiquantitative reverse transcription-PCR. We used laser microbeam microdissection technology to collect pure populations of cholangiocarcinoma cells as well as noncancerous bile duct epithelia from surgical specimens. Preparation of sections, laser microbeam microdissection, extraction of total RNA, and T7-based amplification were done as described previously (23). A mixture of normal intrahepatic biliary epithelial cells in liver tissues from 10 patients with metastatic liver tumor was prepared as a universal control. Total RNA was extracted from cultured cells using Trizol reagent according to the manufacturer's protocol (Invitrogen, Carlsbad, CA). Extracted RNA was reversely transcribed for single-stranded cDNAs using poly(dT)12-18 primer (Amersham Biosciences, Buckinghamshire, United Kingdom) with SuperScript II reverse transcriptase. Each single-stranded cDNA was diluted for subsequent PCR amplification. Standard reverse transcription-PCR (RT-PCR) was carried out in a 12 µL volume of PCR buffer (Takara, Tokyo, Japan) and amplified for 4 minutes at 94°C for denaturing followed by 25 cycles (for ACTB) or 30 cycles (for RASGEF1A) of 94°C for 20 seconds, 53°C (for ACTB) or 60°C (for RASGEF1A) for 30 seconds, and 72°C for 30 seconds in the GeneAmp PCR System 9700 (Applied Biosystems, Foster City, CA). Primer sequences were as follows: ACTB, 5'-CAAGATGAGATTGGCATGG-3' and 5'-TCTCCTTAGAGAGAAGTGG-3' and RASGEF1A, 5'-TTTGCACTTTCTGAGGTTCTAGC-3' and 5'-GTCCTGCATTATGGTACAGCTTC-3'.
Northern blot analysis. Human multiple-tissue Northern blots (BD Biosciences, Palo Alto, CA) were hybridized with a 32P-labeled RASGEF1A cDNA as a probe. Prehybridization, hybridization, and washing were done according to the supplier's recommendations. The blots were autoradiographed with intensifying screens at 80°C for 120 hours.
Ras nucleotide dissociation assay. The entire coding regions of K-RAS (amino acids 1-189), Ha-RAS (amino acids 1-189), N-RAS (amino acids 1-189), RASGEF1A, or the catalytic domain of SOS (amino acids 564-1,049) were cloned into an appropriate cloning site (BamHI and XhoI) of pGEX-6P expression vector (Amersham Biosciences). Glutathione S-transferase (GST) fusion protein was expressed in BL21 bacterial strain of Escherichia coli, and the recombinant protein was purified from the whole-cell lysate using glutathione-Sepharose 4B resin according to the manufacturer's protocol (Amersham Pharmacia Biotech). Ras nucleotide dissociation assay was carried out as described elsewhere (24). Recombinant GST-RAS protein was bound with [8-3H]-labeled GDP by incubating with 400 pmol of [8-3H]-labeled GDP (12.4 Ci/mmol; Amersham Biosciences) in 100 µL of buffer containing 20 mmol/L Tris (pH 8.0), 50 mmol/L NaCl, 1 mg/mL bovine serum albumin, 1 mmol/L DTT, and 1 mmol/L EDTA at 30°C for 15 minutes. Reaction mixture (20 µL) was mixed with or without recombinant RASGEF1A in 20 µL of buffer containing 20 mmol/L Tris (pH 8.0), 50 mmol/L NaCl, 1 mg/mL bovine serum albumin, 1 mmol/L DTT, 5 mmol/L MgCl2, and 0.8 mmol/L GTPgS and incubated at 30°C for an additional 15 minutes. Recombinant SOS containing the GEF domain served as a positive control. Reaction was terminated by adding 40 µL of ice-cold stop solution [20 mmol/L Tris (pH 8.0), 50 mmol/L NaCl, and 15 mmol/L MgCl2], and the mixture was spotted onto P81 phosphocellulose squares (Upstate, Charlotteville, VA). After being washed twice with 3 mL of ice-cold stop solution, the filter was subjected to an Aloka LSC-5100 liquid scintillation counter (Aloka, Tokyo, Japan) to measure the radioactivity of [3H]GDP associated with Ras.
In vitro analysis of Ras activation. Activation of Ras was measured by Raf-1 pull-down assay using Ras Activation Assay kit (Upstate) according to the supplier's recommendations. Briefly, agarose beads conjugated with GST fusion protein containing the Ras-binding domain of Raf-1 were incubated with lysates from COS7 cells transfected with pCAGGS-n3Fc-RASGEF1A (RASGEF1A) or pCAGGS-n3Fc-Mock (Mock) at 4°C for 45 minutes. Proteins bound to Raf-1 were precipitated, separated on SDS-PAGE, and subsequently analyzed by Western blotting with anti-pan Ras antibody (Upstate).
Construction of small interfering RNA expression vectors against RASGEF1A. Plasmids expressing small interfering RNAs (siRNA) were prepared by cloning double-stranded oligonucleotides into the BbsI site of psiH1BX3.0 vector as described previously (25). The sequences of paired oligonucleotides are as follows: siRNA-B, 5'-TCCCGAGAATGGCACAGTGAAGATTCAAGAGATCTTCACTGTGCCATTCTC-3' and 5'-AAAAGAGAATGGCACAGTGAAGATCTCTTGAATCTTCACTGTGCCATTCTC-3; siRNA-E, 5'-TCCCCATCTACTTCCTGCACAAATTCAAGAGATTTGTGCAGGAAGTAGATG-3' and 5'-AAAACATCTACTTCCTGCACAAATCTCTTGAATTTGTGCAGGAAGTAGATG-3'; siRNA-Bmis3, 5'-TCCCTAGAACGGCATAGTGAAGATTCAAGAGATCTTCACTATGCCGTTCTA-3' and 5'-AAAATAGAACGGCATAGTGAAGATCTCTTGAATCTTCACTATGCCGTTCTA-3'; and siRNA-EGFP, 5'-TCCCGAAGCAGCACGACTTCTTCTTCAAGAGAGAAGAAGTCGTGCTGCTTC-3' and 5'-AAAAGAAGCAGCACGACTTCTTCTCTCTTGAAGAAGAAGTCGTGCTGCTTC-3'. As control, a three-nucleotide substitution was introduced into siRNA-B (psiH1BX-Bmis3). The paired oligonucleotides were phosphorylated with T4 polynucleotide kinase and subsequently annealed to produce double-stranded oligonucleotides by boiling for 5 minutes and cooling down slowly. Expression of RASGEF1A was examined by semiquantitative RT-PCR 24 hours after transfection.
Cell viability assay. SSP25 cells plated on 10-cm dish (1 x 106 per dish) were transfected with plasmids expressing siRNA using either Nucleofector (Amaxa, Gaithersburg, MD) or Fugene 6 reagent (Roche Diagnostics, Mannheim, Germany). The cells were maintained in culture medium containing 10% fetal bovine serum supplemented with 0.9 mg/mL geneticin for 2 weeks. The viable cells were measured by 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) assay using a cell-counting kit (Dojindo, Kumamoto, Japan). To analyze the knockdown effect on RASGEF1A, we extracted total RNA from the cells at 24 hours after transfection and carried out semiquantitative RT-PCR analysis.
Wound-healing and Matrigel invasion assays. The entire coding region of RASGEF1A (Genbank accession no. AK095136) was amplified by RT-PCR using a set of primers, 5'-ATTGAATTCCGGCCAGAATGTTCCTGGAGC-3' and 5'-AATCTCGAGGGCTCTGTTCAGAAGGGTGGTC-3', and cloned into an appropriate enzyme site of pCAGGS-n3Fc vector (pCAGGS-n3Fc-RASGEF1A). We established COS7 cells expressing RASGEF1A (COS7-RASGEF1A) and control cells (COS7-Mock) by transfecting COS7 cells with pCAGGS-n3Fc-RASGEF1A or pCAGGS-Mock plasmids. The cells were maintained in culture medium supplemented with 0.9 mg/mL geneticin, and single colonies were selected 2 weeks after the transfection. Expression of RASGEF1A was confirmed by Western blot analysis with anti-FLAG antibody. Cell growth was analyzed in triplicate using cell-counting kit according to the manufacturer's protocol. For the wound-healing migration assay, cells were grown to confluence in six-well plates for 2 days, and a scrape in the form of a cross was made through the confluent monolayers with a plastic pipette tip. Several wounded areas were marked for orientation, observed, and then photographed by phase-contact microscopy at indicated times after the scratch. We further investigated invasion of cells using BD BioCoat Matrigel invasion chambers with 8-µm pores (BD Biosciences, San Jose, CA). The number of COS7-RASGEF1A and COS7-Mock cells that migrated through the chamber was counted in five independent visual fields under a microscope at 36 hours of incubation.
Statistical analysis. Statistical analyses were done by ANOVA and Scheffe's F tests. A P value of <0.05 was considered to be statistically significant.
| Results |
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3.3 kb that was moderately expressed in the brain and spinal cord and weakly expressed in the lymph node and adrenal gland but not in any of 19 other tissues examined (Fig. 1B). The gene was recently termed as RASGEF1A because it contained a Ras GEF domain. A homology search with the deduced RASGEF1A amino acid sequence showed 30% identity with PDZ-GEF2 and 29% with PDZ-GEF1.
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40%. Similarly, RASGEF1A reduced GDP-bound K-RAS by
50% (Fig. 2A
). It also dissociated GDP bound to H-RAS and N-RAS by approximately 40% and 80%, respectively (Fig. 2B and C). These data indicate that RASGEF1A has GDP dissociation activity to all of the three Ras proteins examined.
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RASGEF1A expression is essential for the growth of cancer cells. We carried out colony formation assay to examine oncogenic activity of RASGEF1A in COS7 cells and found no difference in the number of colonies between the cells with or without RASGEF1A overexpression (data not shown). To further evaluate its potential role in cell growth, we prepared two forms of plasmids expressing RASGEF1A-specific siRNAs (RASGEF1A-siRNA-B and RASGEF1A-siRNA-E) together with neomycin-resistant gene (psiH1BX-RASGEF1A-B and psiH1BX-RASGEF1A-E). As control, a three-nucleotide substitution was introduced into siRNA-B (psiH1BX-Bmis3). We transfected each of three plasmids, siH1BX-RASGEF1A-B, psiH1BX-RASGEF1A-E, or psiH1BX-RASGEF1A-Bmis3, into SSP25 cholangiocarcinoma cells that expressed RASGEF1A at a high level. Semiquantitative RT-PCR showed that RASGEF1A expression was suppressed by psiH1BX-RASGEF1A-B or psiH1BX-RASGEF1A-E compared with psiH1BX-Bmis3, psiH1BX-EGFP, or psiH1BX-Mock (Fig. 3A ). In concordant to the expression level of RASGEF1A, the cells transfected with psiH1BX-RASGEF1A-B or psiH1BX-RASGEF1A-E started to show apparent growth retardation at day 6 and revealed marked growth retardation at day 14 compared with those transfected with the other plasmids (Fig. 3B). These data suggest that expression of RASGEF1A is crucial for the survival of SSP25 cholangiocarcinoma cells and that continuous inhibition of RASGEF1A is necessary to inhibit the growth of cancer cells.
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| Discussion |
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From the structural point of view, RASGEF1A contained five structurally conserved regions that are found in other Ras GEF members (26, 27). It also had a Ras exchange motif or RasGEFN domain between codons 49 and 178, which is supposed to stabilize the large helical hairpin structure that pries open the GTP-binding pocket. However, RASGEF1A does not have any additional conserved domains, such as Dbl homology domain, pleckstrin homology domain, the EF hands, cysteine-rich C1 domain, or PDZ domain shown in SOS, GRF1, RasGRP, or PDZ-GEF (28). Therefore, RASGEF1A should exert different function from these Ras GEFs. Members of other Ras GEFs have different spectrums of substrates; for example, SOS1 modulates K-RAS, H-RAS, N-RAS, R-RAS2, R-RAS3, and Rac1 but not R-RAS; Ras-GRP2 stimulates K-RAS, H-RAS, N-RAS, R-RAS, R-RAS2, Rap1A, Rap2A but not H-RAS (29). Hence, RASGEF1A may also activate its specific substrates that have not been examined in our study.
Recent studies indicated that Ras signaling is involved not only in cell proliferation and survival but also in cell motility and cell adhesion. Active Ras interacts and regulates multiple downstream effectors that stimulate diverse signaling pathways. These include Raf/mitogen-activated protein (MAP)/extracellular signal-regulated kinase (ERK) kinase/ERK, PI3K/Akt, RalGDS/Ral, and Tiam1/Rac1 pathways. Accumulating evidences suggest that Raf/MAP/ERK kinase/ERK is involved in Ras-mediated cell proliferation. Because our Raf association assay showed an increase of activated Ras in the presence of RASGEF1A, downstream Raf/MAP/ERK kinase/ERK is supposed to be enhanced in cells expressing RASGEF1A. In accordance with this view, we have revealed that elevated expression of RASGEF1A is essential for the growth of ICC because suppression of RASGEF1A by introduction of specific siRNA decreased the growth of ICC cells. Although we tested oncogenic activity of RASGEF1A by colony formation assays using COS7 and NIH3T3 fibroblast cells, the number of colonies was unchanged between cells expressing exogenous RASGEF1A and controls. Introduction of RASGEF1A alone may not be sufficient to cause transformation in COS7 or NIH3T3 fibroblast cells. Alternatively, oncogenic activity of RASGEF1A may be tissue and/or cell type dependent. Because RASGEF1A has GEF activity to K-RAS and activated Ras transduces growth signaling, inhibition of GEF activity of RASGEF1A should be a promising therapeutic option for ICCs.
We additionally evidenced that exogenous expression of RASGEF1A enhanced cellular motility. This observation is in good agreement with the view that Ras activation plays a role in cell motility (13). GTP-bound form of Ras activates its downstream effectors, including Raf and PI3K (30, 31). Enhanced PI3K activity resulted in increased invasion of breast cancer cells, which was mediated through ß4 integrin in a Rac1-dependent manner (32). PI3K also activates Rac GEFs and induces actin reorganization and membrane ruffling, which are associated with cell motility (33). Additionally, Ras enhances Tiam1, which results in activated form of Rac1, a key player for cellular migration and remodeling of actin cytoskeleton (34). Although further investigations on the mechanisms of the increased motility by RASGEF1A are necessary, elevated RASGEF1A expression is likely to be involved not only in development of ICC but also in its progression.
We investigated expression levels of RASGEF1A and mutation of K-RAS in ICC tissues, but we failed to detect any correlation between the expression and mutation (data not shown). Because RASGEF1A activates H-RAS and N-RAS in addition to K-RAS, enhanced RASGEF1A expression may have an additional role(s) in the carcinogenesis of ICC compared with mutation in K-RAS. Therefore, inhibitors of RASGEF1A may be effective anticancer drugs, although inhibitors of K-RAS failed to bring successful results in clinical studies.
| Acknowledgments |
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| Footnotes |
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The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked advertisement in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
Received 4/ 3/06; revised 7/31/06; accepted 8/29/06.
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6ß4 integrin promotes carcinoma invasion. Cell 1997;91:94960.[CrossRef][Medline]
, a Rac guanosine exchange factor, and Rac. Mol Cell Biol 1998;18:474451.This article has been cited by other articles:
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V. J. HASSID, F. A. ORLANDO, Z. T. AWAD, D. TAN, T. KHOURY, B. H. AHMED, and S. J. ALRAWI Genetic and Molecular Abnormalities in Cholangiocarcinogenesis Anticancer Res, April 1, 2009; 29(4): 1151 - 1156. [Abstract] [Full Text] [PDF] |
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