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Human Cancer Biology |
Authors' Affiliations: 1 Department of Pathology, University of Washington, Seattle, Washington; 2 Department of Immunology, Baylor College of Medicine, Houston, Texas; and 3 Centro de Investigaciones Oncológicas (CIO-FUCA), Buenos Aires, Argentina
Requests for reprints: W. Tony Parks, Department of Pathology, HSB E506, University of Washington, Seattle, WA 98195. Phone: 206-543-4317; Fax: 206-543-3644; E-mail: parkst{at}u.washington.edu.
| Abstract |
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Experimental Design: Immunohistochemical and microarray analyses were done on human colon cancer tissue specimens to determine the levels of one endocytic protein, sorting nexin 1 (SNX1). SW480 cells, a human colon cancer cell line that retains a relatively high level of SNX1 expression, were used to assess the effects of down-regulating this protein by small hairpin RNA. Activation of signal transduction cascades was evaluated in these cells using Western blotting, and multiple functional assays were done.
Results: We determined by immunohistochemistry that the level of SNX1 was significantly down-regulated in 75% of human colon cancers. In corroborative studies using microarray analysis, SNX1 message was significantly decreased (log2 ratio less than 1) for 8 of 19 colon carcinomas. Cell lines with reduced SNX1 levels showed increased proliferation, decreased apoptosis, and decreased susceptibility to anoikis. They also showed increased activation of epidermal growth factor receptor and extracellular signal-regulated kinase 1/2 in response to epidermal growth factor. This increased activation was abolished by inhibition of endocytosis.
Conclusions: These data suggest that loss of SNX1 may play a significant role in the development and aggressiveness of human colon cancer, at least partially through the mechanism of increased signaling from endosomes. Further, these findings suggest that dysregulation of endocytic proteins may represent a new paradigm in the process of carcinogenesis.
In support of this hypothesis, we have evidence that one endocytic protein, sorting nexin 1 (SNX1), is significantly down-regulated during colonic carcinogenesis. The sorting nexins comprise a large family of endocytic proteins that helps determine the fate of internalized receptors as these receptors reach the early endosome (7). Although the precise function of the sorting nexins in not entirely clear, SNX1 may target receptors to the lysosome for degradation (8). SNX1 has been shown to interact with multiple receptor tyrosine kinases [including the epidermal growth factor (EGF) receptor (EGFR), the platelet-derived growth factor receptor-ß, the insulin receptor, the transferrin receptor, and the long form of the leptin receptor (9)] and multiple receptor serine-threonine kinases (10).
We hypothesized that the decreased SNX1 in colon cancer results in the missorting of cell surface receptors, with consequent alterations in receptor signaling in these cells and promotion of tumorigenesis. Immunohistochemical staining of human colon cancers showed significant loss of SNX1 for 75% of the tumors. Microarray analysis of another 19 human colon cancers showed significant down-regulation of SNX1 mRNA in 8 of these 19 cases. Using small hairpin RNA (shRNA) depletion of SNX1 in SW480 cells, which retain SNX1 expression, we found that decreasing SNX1 led to increased proliferation, decreased apoptosis, and decreased anoikis. Moreover, reduction of SNX1 in these same cells resulted in increased EGFR phosphorylation and increased downstream signaling. This increase in mitogen-activated protein kinase (MAPK) signaling in response to EGF could be abolished by inhibition of endocytosis. This constellation of findings suggests that SNX1 plays a significant role in the development and manifestation of human colon cancer.
| Materials and Methods |
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Immunohistochemistry. Staining was done on 5-µm sections of paraffin-embedded human adenocarcinomas. Antigen retrieval was achieved by heating the slides in citrate buffer (pH 6.0; Biogenix, San Ramon, CA). The slides were incubated in 1 µg/mL SNX1 antibody (Transduction Laboratories, Lexington, KY) for 45 minutes or in a 1:300 dilution of EGFR antibody (Cell Signaling Technology, Beverly, MA) overnight. The slides were washed and incubated in a biotinylated goat anti-mouse IgG or anti-rabbit IgG secondary antibody (1:200; Vector Laboratories, Burlingame, CA) followed by 3% peroxide block. After washing, the slides were developed using the avidin-biotin complex method/3,3'-diaminobenzidine detection kit (Ventana Medical Systems, Tucson, AZ) followed by methyl green counterstain (DAKO, Carpinteria, CA).
Patients and tissue samples (microarray samples). A total of 41 pairs of colorectal cancer tissues and corresponding adjacent noncancerous tissues was obtained from 41 patients with sporadic colorectal adenocarcinoma who underwent surgical resection at the J. Mendez Hospital and M.B. de Martinez Hospital (Buenos Aires, Argentina) between May 2003 and June 2004. Only specimens containing >75% tumor cells were used for analysis. Samples were macrodissected by pathologists and, within 30 minutes of removal, frozen in liquid nitrogen for molecular analysis.
RNA extraction and cDNA preparation. Total RNA was extracted from frozen samples using Trizol reagent (Invitrogen Life Technologies, Inc., Carlsbad, CA). Only 38 samples from our tumor bank that yielded high-quality RNA with minimal degradation and clear 28S/18S ribosomal bands were included in the analysis. Twenty-five tumors of different clinical stages, in addition to 13 normal mucosa specimens, were used for microarray experiments. Normal samples were pooled in equimolar amounts to generate a single standard reference RNA used as a control for each microarray hybridization. For half of the microarray hybridizations, 50 µg of total RNA isolated from each tumor sample were retrotranscribed and labeled with Cy5-dCTP, and cDNA obtained from 50 µg of the standard reference RNA was labeled with Cy3-dCTP; the fluorochromes were inverted in the second half of microarrays to reduce dye bias.
Microarray hybridization and image acquisition. Hybridization experiments were done on SS-Human 19Kv7 microarray (University Health Network Microarray Centre, Toronto, Ontario, Canada). Equivalent amounts of Cy5-cDNA and Cy3-cDNA were combined and hybridized to microarray slides for 18 hours at 37°C. Hybridized slides were scanned using the GenePix 4000a Scanner (Axon Instruments, Foster City, CA), and images were acquired by GenePix Pro v5.0 software.
Data analysis. Twenty-five microarray data sets were sorted and loaded on ExpressConverter v1.5 to transform GenePix generated result files to the .mev file format for use with Microarray Data Analysis System v2.18 software. Microarray Data Analysis System was used to preprocess and normalize (within-slide LOWESS normalization) the raw microarray data. The microarray data have been uploaded to the Gene Expression Omnibus repository4 under the accession number GSE3294.
Statistical methods. Using the log2 ratios of selected genes, the reference list was generated by using Student's t statistics calculated on the full set of 21 patients. Significantly different expression between tumor and normal mucosa was estimated using a one-class t test; the P value of the gene was determined by forming a distribution based on 10,000 random permutations of the data. The P value for each gene was scaled by adjusted Bonferroni correction to correct for the large number of observations.
Cell culture. SW480, HT29, HCT116, HCT15, Moser, DLD-1, and SW48 human colon cancer cells were grown according to the American Type Culture Collection (Manassas, VA) recommended conditions.
shRNA preparation. Sequences to deplete SNX1 were modified from Gullapalli et al. (11) to insert into the pSuperRetro vector. The specific sequence used for the depletion (5'-ACTCTAGTCAACCATAGGA-3') was taken directly from SNX1 siRNA2 from Gullapalli et al. (11). A nonsilencing control shRNA oligonucleotide was also obtained (Qiagen, Valencia, CA). Oligonucleotides were ligated into the pSuperRetro vector (OligoEngine, Seattle, WA). The constructs were transfected into SW480 cells. Puromycin (4 µg/mL) was used to select multiple stable clones.
Tritiated thymidine incorporation assay. SW480 control and SNX1 shRNA-transfected cells were plated in triplicate. Cells were pulsed with 1 µCi/mL tritiated thymidine (Amersham Biosciences, Piscataway, NJ) for 3 hours, precipitated with 10% trichloroacetic acid, and solubilized with 0.5 N sodium hydroxide before quantitation with a scintillation counter.
Western blotting. Whole-cell lysates (10 µg total protein) were immunoblotted using antibodies against SNX1 (Transduction Laboratories). Whole-cell lysates (5 µg total protein) were also immunoblotted using antibodies against (Tyr1068) phosphorylated and total EGFR (Cell Signaling Technology, Danvers, MA), phosphorylated extracellular signal-regulated kinase (ERK) 1/2 (Sigma, St. Louis, MO), total ERK 1/2 (12), and
-tubulin (Sigma).
Active caspase-3 assay. Sixteen hours after plating, both adherent and floating cells were collected, and protein lysates were prepared as described previously (13). Protein (100 µg) was incubated with the fluorogenic caspase-3 substrate DEVD-AMC (BioMol, Plymouth Meeting, PA) for 1 hour, and enzymatic activity was determined as described previously (13). As a positive control for apoptosis, AML-12 human hepatocyte cells were pretreated for 30 minutes with actinomycin D (250 ng/mL) followed by 15-hour treatment with 20 ng/mL tumor necrosis factor (13).
Anoikis assay. The anoikis assay was modified from Frisch and Francis (14). SW480 cells were cultured for 24 hours in plates coated with poly-HEMA (Sigma) to prevent attachment. Nonadherent cells were collected, rinsed with PBS, and lysed. Lysates were quantitated for protein levels, and active caspase-3 was measured.
Inhibition of endocytosis. Endocytosis was reduced through either depletion of potassium or incubation in a hypertonic medium as used by Hansen et al. (15).
| Results |
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The intensity of the SNX1 staining pattern was quantitated as described in Supplementary Table S2. Normal colonic epithelium shows a distinctly vesicular pattern when stained with SNX1 (as is expected for a protein that associates with the early endosome; Fig. 1A and B ). Normal smooth muscle and vascular endothelium show only minimal staining. Reactive endothelial cells and macrophages stain strongly, with reactive stroma often outlining malignant glands (Fig. 1C-F, asterisks). Tumors (15 of 20, 75%) showed down-regulation of SNX1 staining (score of 0) when compared with the adjacent normal epithelium (Supplementary Table S1). Figure 1 shows two examples of this staining pattern, each example containing an internal control of normal colonic epithelium. In Fig. 1C, the left half of the image is composed entirely of malignant glands, whereas the right half contains normal epithelium (except for a single malignant gland that is apparent immediately adjacent to the epithelium). In Fig. 1E, normal colon is present along the bottom of the picture, whereas invasive tumor nodules are notable within the submucosa.
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1 was 77; P < 0.01, two-tailed t test). Similarly, decreased immunoreactivity for SNX1 correlated with male sex of the patient (P = 0.03, Fisher's exact test). These two associations may suggest that decreased SNX1 immunoreactivity identifies a distinct subset of human colon carcinomas. No association was noted between SNX1 staining and tumor size or grade. No correlation was identified between SNX1 immunoreactivity and the presence of lymph node metastases. Microarray analysis confirms SNX1 down-regulation in human colon cancer. To confirm our immunohistochemical results using a different modality, we compared samples of human colon cancer with normal colonic epithelium by microarray analysis. Tumor SNX1 message expression was less than control for 18 of the 19 tumors. For 8 of these tumors, the log2 ratio was less than 1. The average log2 ratio was 0.876, which was significant at the level of P < 0.01.
The combination of these immunohistochemical and microarray data thus shows that down-regulation of SNX1 can be detected in a substantial subset of human colon carcinomas at the level of both transcription and protein expression. The detection of this down-regulation through two unrelated modalities argues strongly against the possibility of a technical artifact and instead documents the validity of these results in human colon tumors.
shRNA constructs deplete SNX1 in human colon cancer cells. Mere down-regulation of a protein within a tumor does not establish the significance of the protein for the development of the tumor. To test the hypothesis that down-regulation of SNX1 promotes colon tumorigenesis, we sought to determine the effects of SNX1 depletion on colon tumor cells. We screened seven colon cancer cell lines (SW480, HT29, HCT116, HCT15, Moser, DLD-1, and SW48) for endogenous SNX1 by Western blotting. We found that, of these cell lines, SW480 cells contain the highest level of SNX1 (Fig. 2A
). HT29, HCT116, HCT15, Moser, and DLD-1 cells contain low but detectable levels of SNX1 (Fig. 2A). SW48 cells contain only minimal levels of SNX1 (Fig. 2A). Comparison with the results of a tumor cell line microarray (Gene Expression Omnibus accession GSD89) confirmed the SNX1 Western blotting (data not shown). We then chose to continue our experiments in SW480 cells using the only cell line that retained relatively high levels of SNX1 expression. SNX1 was sequenced in this cell line and was free of mutations (data not shown). Stable shRNA-mediated depletion of SNX1 was established, and two clones were selected for further experiments. Approximately 70% inhibition was apparent in SW480 clone 1, and SW480 clone 3 showed even greater inhibition (
90%) compared with cells stably transfected with a control shRNA construct (Fig. 2B). Levels of SNX2, the most closely related sorting nexin to SNX1, were unchanged by the depletion of SNX1 (Fig. 2B).
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To assess the effect of SNX1 reduction on the ability of these cells to survive in the absence of attachment to an underlying substrate, an anoikis assay was done. SW480 control cells had a moderately high basal rate of anoikis, and this rate was substantially reduced in both SNX1-depleted clones (Fig. 3C).
Loss of SNX1 does not correlate with increased EGFR expression. Because overexpression of SNX1 has been shown to result in increased degradation of the EGFR (8), we initially hypothesized that the corollary also holds truethat is, loss of SNX1 results in decreased receptor degradation and therefore increased receptor expression. To test this hypothesis, we stained the cohort of tumor samples with an antibody against the EGFR. The intensity of EGFR staining was scored according to the scoring criteria described in Supplementary Table S2. The results are detailed in Supplementary Table S1. For the majority of the tumors (12 of 17), the intensity of the EGFR staining was equal between the tumor and the surrounding normal epithelium (Supplementary Table S1). Figure 4A and B shows two representative sections of tumor and adjacent normal epithelium in which the staining patterns are comparable. Most significantly, the majority (11 of 14) of the tumors that showed marked down-regulation of SNX1 (a SNX1 score of 0) showed no change in EGFR levels (Fig. 4C). This finding suggests that down-regulation of SNX1 in human tumors typically does not lead to increased EGFR expression.
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-tubulin) showed a slightly higher level of total ERK 1/2 in the SNX1-depleted cells than in the control cells. This difference was far less than the difference in ERK phosphorylation between these cell lines, however.
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| Discussion |
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Our evidence strongly suggests that down-regulation of SNX1 is a significant factor in the development of the majority of human colon cancers. We found that 75% of these tumors showed immunohistochemical evidence of significant SNX1 reduction (Fig. 1). We then confirmed these immunohistochemical results with microarray data that also showed significant down-regulation of SNX1 mRNA in at least 8 of 19 human colon cancers. When human colon cancer cells retaining SNX1 expression were depleted of this protein, they showed multiple alterations, suggesting that they had developed a more aggressive phenotype. Down-regulation of SNX1 both increased proliferation (Fig. 3A) and decreased apoptosis (Fig. 3B) in these tumor cells. In addition, decreased SNX1 protein resulted in decreased susceptibility to anoikis (Fig. 3C). Taken together, these changes in vivo likely synergize to increase the rate of tumor growth and may promote the ability of these tumor cells to invade and metastasize.
Overall, our results strongly suggest that down-regulation of SNX1 is a significant factor in the development and phenotypic expression of human colon cancer, and they further suggest that defects in endocytic sorting may represent an emerging mechanism underlying the process of carcinogenesis. For example, one proto-oncogene, Cbl, whose function has been unknown until recently, has been found to regulate endocytic sorting. The Cbl proto-oncogene has been shown to control the sorting of endocytosed receptors through monoubiquitination (2022). Activating mutations of Cbl, which alter the endocytic pathways taken by internalized receptors, are oncogenic.
Considerable evidence has developed recently suggesting that endocytic processes directly regulate signaling pathways (4, 5). Signaling is modulated when changes in receptor trafficking alter one of two cellular properties. The first is cell surface receptor levels; increased receptor levels, in the presence of the appropriate ligand, lead to increased signaling. Because overexpression of SNX1 has previously been shown to increase the degradation of the EGFR (8), we initially hypothesized that our observation of a loss of SNX1 on colon tumors would correlate with an increase in EGFR expression. We tested this hypothesis by staining our colon cancer sections for EGFR expression. We saw increased EGFR expression in 4 of 17 (24%) of the tumors that we stained, a percentage on par with recently reported results for EGFR expression (23). When we particularly examined the 14 of these cancers that showed down-regulation of SNX1, EGFR expression was increased only for 2 (Fig. 4C). Although immunohistochemistry is only a crude measure of surface receptor levels, these data accord with our in vitro findings in our SNX1-depleted cells (Fig. 4D) and with previous in vitro studies in HeLa cells finding no change in EGFR levels with SNX1 down-regulation (11, 24). In aggregate, these results suggest that down-regulation of SNX1 increases EGFR signaling through a mechanism independent of increased surface EGFR expression.
The second property that endocytic sorting can modulate to influence signaling is the degree of signaling that takes place on endocytic vesicles. It is now widely accepted that signaling occurs not only from cell surface receptors but also from activated receptors after they have been endocytosed (46). Changes in endocytic trafficking may affect signaling (and therefore tumorigenesis) not only by altering cell surface receptor levels but also by modifying the transit of these proteins through the cytoplasm, with resulting modulation in their intracytoplasmic signaling characteristics, independent of the number of surface receptors. That is, cells with the same number of cell surface receptors may show different signal fluxes for a given ligand due to differences in the degree of endosomal signaling. Our studies clearly show that down-regulation of SNX1 leads to increased EGFR phosphorylation (Fig. 5A and B) and increased ERK 1/2 signaling (Fig. 5C and D) in response to EGF. To test the significance of the signaling from endosomes, we inhibited endocytosis in our cell lines. Limitation of EGF stimulation to cell surface receptors reduced overall ERK 1/2 signaling and specifically equalized ERK 1/2 signaling between our control and SNX1-depleted cells (Fig. 6), suggesting that the previously observed increase in ERK 1/2 activation in SNX1-depleted cells was derived from increased endosomal EGFR signaling.
In summary, we have identified SNX1 as a protein markedly down-regulated in the majority of human colon cancers. shRNA-mediated depletion of this protein from a human colon cancer cell line results in a more aggressive tumor phenotype, including increased proliferation with decreased susceptibility to apoptosis and anoikis. These data suggest that loss of SNX1 may play a significant role in the development and manifestation of human colon cancer, and they further suggest that dysregulation of endocytic proteins may represent a new paradigm in the process of carcinogenesis.
| Footnotes |
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The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked advertisement in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
Note: Supplementary data for this article are available at Clinical Cancer Research Online (http://clincancerres.aacrjournals.org/).
4 http://www.ncbi.nlm.nih.gov/projects/geo/. ![]()
Received 2/ 8/06; revised 8/29/06; accepted 9/13/06.
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