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Human Cancer Biology |
Authors' Affiliations: 1 Lung Cancer Group and 2 Tumour Bank, Spanish National Cancer Centre, 3 Pulmonary and 4 Pathology Departments, Hospital Universitario 12 de Octubre, Madrid, and 5 Thoracic Surgery Department, Hospital Virgen de la Arrixaca, Murcia, Spain
Requests for reprints: Montserrat Sanchez-Cespedes, Molecular Pathology Programme, Spanish National Cancer Centre, Melchor Fernandez Almagro 3, 28029 Madrid, Spain. Phone: 34-9-1224-6954; Fax: 34-9-1224-6923; E-mail: msanchez{at}cnio.es.
| Abstract |
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Experimental Design: The mutational status of EGFR was determined by direct sequencing in 86 primary lung adenocarcinomas and 12 lung cancer cell lines, and was correlated with a number of variables relating to the tumor and patient. A tissue microarray containing 37 lung tumors was constructed to determine, by fluorescence in situ hybridization analysis, the number of copies of EGFR and ErbB2 genes and, by immunohistochemistry, the levels of EGFR, HER2, phospho-ERK, and phospho-S6 proteins.
Results: EGFR gene mutations were identified in 13% of the primary tumors. The type and clustering of the mutations were identical to those previously reported. Amplification of the EGFR occurred in 14% of the tumors and could arise in tumors with EGFR mutations. Interestingly, mTOR activation, as measured indirectly by augmented levels of phospho-S6 protein, was more frequent in tumors with gene alterations in either EGFR or KRAS (P = 0.00005; Fisher's exact test) than in their wild-type counterparts.
Conclusions: Our data agree with the accumulation of EGFR mutations in a subset of patients with lung cancer. Moreover, we report EGFR gene amplification in EGFR-mutant tumors and a positive correlation between EGFR or KRAS alterations and activation of mTOR signaling.
The epidermal growth factor receptor (EGFR, Erb-B1) belongs to the erbB family of transmembrane tyrosine kinase receptor proteins, which also includes HER2/neu (encoded by erb-B2), HER3 (encoded by erb-B3), and HER4 (encoded by erb-B4; ref. 5). These receptors, by binding to different ligands, trigger a cascade of intracellular signaling reactions that lead to the regulation of several aspects of cell biology, such as cell division, apoptosis, and cytoskeletal rearrangement (5). Mutations in the EGFR gene in lung cancer lead to amino acid changes or in-frame deletions in exons 18 to 21 and arise more frequently in cases of adenocarcinomas, females, nonsmokers, and people of Asian origin (24, 6, 7). These mutations seem to enhance the ability of the ligand to induce EGFR autophosphorylation (3, 8, 9). In addition to its role in lung carcinogenesis, the presence or absence of EGFR mutations has important clinical implications because it seems to determine the responsiveness to EGFR tyrosine kinase inhibitors such as gefitinib (Iressa, ZD1839) or erlotinib (Tarceva, OSI-774; refs. 24, 10). Furthermore, EGFR and ErbB2 gene amplification and protein overexpression have been observed in a subset of lung tumors [see ref. (11) for review]. Tumors featuring gene amplification also have concomitant protein overexpression, although the opposite is not necessarily true. Interestingly, an association between EGFR mutations and increased EGFR gene copy number has recently been described in lung adenocarcinoma cell lines, suggesting a mechanism for amplifying the effect of these oncogenic mutations (8).
Activation of EGFR is mediated by autophosphorylation at several key tyrosine residues leading to the binding of different adaptors involved in downstream signaling (5). The EGFR downstream pathways include AKT and RAS/extracellular signal-regulated kinase (ERK)/mitogen-activated protein kinase, which are involved in cell survival and cell proliferation, respectively. Whether any of these signal transduction pathways is a preferred target of EGFR gene mutations is currently under investigation. Several publications have reported that mutations in EGFR and KRAS, but not in p53, are mutually exclusive (6, 7, 12). These observations may indicate that mutations at both genes are functionally equivalent, hence alterations at only one of them is enough to trigger constant activation of the signaling through RAS/ERK/mitogen-activated protein kinase. However, other studies have reported that EGFR mutants selectively activate AKT-mediated signal transduction but have no effect on ERK signaling (13).
In this study, we have screened a set of primary lung adenocarcinomas from Spanish patients and lung cancer cell lines for EGFR mutations, and evaluated the genetic (KRAS, p53 gene mutations and EGFR, ErbB2 gene amplification) and molecular (EGFR, HER2, phospho-ERK and ribosomal phospho-S6 protein expression) context in which these mutations arise.
| Materials and Methods |
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DNA extraction and mutation analysis. Representative sections from tissue used for DNA extraction were stained with H&E. Freshly frozen and paraffin-embedded tissue from tumors was meticulously dissected to ensure that specimens contained at least 70% tumor cells. Approximately 10 to 20 µm sections were collected from normal and tumor samples and placed in 1% SDS/proteinase K (10 mg/mL) at 58°C overnight. Digested tissue was then subjected to phenol-chloroform extraction and ethanol precipitation. The cell lines A427, A549, H23, H661, H1155, H1170, H1299, H1395, H2087, H2126, Calu-3, and U1552 were obtained from the American Type Culture Collection (Rockville, MD), and cultured under the recommended conditions. DNA from cell lines was extracted using standard proteinase K/isoamyl alcohol protocols. For the screening of EGFR gene mutations, exons 18 to 21 of the gene were PCR-amplified and automatically sequenced. For frozen tumors, PCR reactions were done in a total volume of 25 µL. The mix contained 1.25 units of DNA polymerase (Biotools, Madrid, Spain), 2.5 µL of Tth buffer 10x (Biotools), 2 mmol/L of MgCl2, 200 µmol/L of each deoxynucleotide, 2 µL of DMSO, 6 ng/µL of each primer, and 50 ng of genomic DNA. The PCR cycling conditions consisted of an initial denaturation at 94°C for 5 minutes, followed by two cycles of denaturation (30 seconds at 94°C), annealing (1 minute at 60°C), elongation (1 minute at 72°C), followed by 35 cycles of denaturation (30 seconds at 94°C), annealing (1 minute at 58°C), and elongation (1 minute at 72°C). After the last cycle, a final extension (1 minute at 72°C) was added. The primers used for PCR were as follows: exon 18, forward 5'-TCCAAATGAGCTGGCAAGTG-3' and reverse 5'-CAAACACTCAGTGAAACAAAGAG-3'; exon 19, forward 5'-TGCATCGCTGGTAACATCC-3' and reverse 5'-TGGAGATGAGCAGGGTCTAG-3'; exon 20, forward 5'-GATCGCATTCATGCGTCTTC-3' and reverse 5'-TCCCCATGGCAAACTCTTGC-3'; exon 21, forward 5'-GCTCAGAGCCTGGCATGAA-3' and reverse 5'-GCATCCTCCCCTGCATGTG-3'. The following were used for the sequencing reaction: exon 18, 5'-AAATGAGCTGGCAAGTGCCG-3'; exon 19, 5'-CATCGCTGGTAACATCCACC-3'; exon 20, 5'-CGCATTCATGCGTCTTCACC-3'; and exon 21, 5'-CAGAGCCTGGCATGAACAT-3'.
For paraffin-embedded tumors, PCR reactions were done in a total volume of 25 µL. The mix contained: 21.5 µL of Taq Platinum PCR SuperMix [22 units/mL complexed recombinant Taq DNA polymerase with Platinum Taq antibody, 22 mmol/L Tris-HCl (pH 8.4), 55 mmol/L KCl, 1.65 mmol/L MgCl2, 220 µmol/L deoxynucleotide triphosphates, and stabilizers; Invitrogen Life Technologies, Karlsruhe, Germany], 6 ng/µL of each primer, 100 ng of genomic DNA. Thermal cycling conditions for exons 19 and 21 included 5 minutes at 94°C, followed by two cycles of 94°C for 30 seconds, 58°C for 1 minute, 72°C for 1 minute, and 40 cycles of 94°C for 30 seconds, 56°C for 1 minute, 72°C for 1 minute, and finally one cycle of 72°C for 1 minute; and for exons 18 and 20, 5 minutes at 94°C, followed by two cycles of 94°C for 30 seconds, 60°C for 1 minute, 72°C for 1 minute, and 40 cycles of 94°C for 30 seconds, 58°C for 1 minute, 72°C for 1 minute, and finally one cycle of 72°C for 1 minute. The primers used for PCR were as follows: exon 18, forward 5'-TGACCCTTGTCTCTGTGTTC-3' and reverse 5'-AGAGGCCTGTGCCAGGGAC-3'; exon 19, forward 5'-CAGTTAACGTCTTCCTTCTC-3' and reverse 5'-CACACAGCAAAGCAGAAACTC-3'; exon 20, forward 5'-ACTGACGTGCCTCTCCCTC-3' and reverse 5'-CCCGTATCTCCCTTCCCTG-3'; exon 21, forward 5'-TCACAGCAGGGTCTTCTCTG-3' and reverse 5'-CTGACCTAAAGCCACCTCC-3'. The following were used for the sequencing reaction: exon 18, 5'-CCCTTGTCTCTGTGTTCTTG 3'; exon 19, 5'-GTTAACGTCTTCCTTCTCTC-3'; exon 20, 5'-CTGACGTGCCTCTCCCTCC-3'; and exon 21, 5'-AGCAGGGTCTTCTCTGTTTC-3'.
The PCR products were electrophoresed on 2% agarose gel and stained with ethidium bromide. The bands were excised, purified with an UltraClean 15 Kit (MO Bio Laboratories, Solana Beach, CA) and sequenced using Big Dye Terminator chemistry (Applied Biosystems, Foster City, CA) with an ABI PRISM 3700 DNA Analyzer (Perkin-Elmer Life Sciences, Inc., Boston, MA). All variants were confirmed by resequencing independent PCR products. Mutations in p53 and KRAS genes were screened as previously described (15).
Tissue microarray. Formalin-fixed, paraffin-embedded tissue blocks from 37 patients were used for tissue microarray construction. A tissue arrayer (Beecher Instruments, Silver Spring, MD) was used to construct the tissue microarray (16). Slides were reviewed by pathologists (E. Conde and F. Lopez-Rios), who selected areas containing tumor cells, avoiding those areas featuring necrosis, inflammation and keratinization. To assess reproducibility, we selected two 1-mm diameter cylinders from different areas of the tumor. Normal lung tissue and reactive tonsil tissue were included as control specimens to ensure quality, reproducibility, and homogenous staining.
Fluorescence in situ hybridization analysis. Fluorescence in situ hybridization analysis was carried out for the detection of ErbB2 and EGFR amplification using commercially available probes from Vysis, Inc. (Downers Grove, IL). We used 4-µm sections of all the tissue microarrays. In both cases, the specified gene probes, which span the entire gene, were labeled in SpectrumOrange. These probes also contain a centromeric probe for chromosome 7 (for the EGFR probe) and chromosome 17 (for the ErbB2 probe), which are labeled in SpectrumGreen and hybridize to the alpha satellite DNA located at their centromeres.
The slides were deparaffinized, boiled in a pressure cooker with 1 mmol/L EDTA (pH 8.0) for 10 minutes, and incubated with pepsin at 37°C for 30 minutes. The slides were then dehydrated. The probes were denatured at 75°C for 2 minutes after overnight hybridization at 37°C in a humid chamber. Slides were washed with 0.4x SSC and 0.3% NP40.
Fluorescence in situ hybridization was evaluated without previous knowledge of other genetic, clinical, or immunohistochemical results. Fluorescence signals in each sample were scored by counting the number of single-copy gene and centromeric signals in an average of 130 (60-210) well-defined nuclei. Amplification was defined as the presence (in >5% of tumor cells) of either >10 gene signals or more than three times as many gene signals as centromere signals in the same chromosome. The cutoff values for copy-number changes were obtained from the analysis of normal adjacent cells in each experiment.
Immunohistochemistry. Immunohistochemical staining of EGFR, HER2, phospho-ERK, and phospho-S6 (phospho-Ser235/236) proteins was done on 3-µm-thick sections from the tissue microarray and transferred to silanized glass slides. The protocols used were those previously described (16). After incubation, immunodetection was done with the DAKO EnVision Visualization Method (Dako, Glostrup, Denmark), with diaminobenzidine chromogen as the substrate. Sections were counterstained with hematoxylin. The antibodies used in the analyses, indicating source, dilution, and corresponding internal controls are described in Table 1. Immunostaining was evaluated by two different pathologists (E. Conde and F. Lopez-Rios), using uniform criteria and without prior knowledge of the clinical and pathologic characteristics of the patients.
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10% and <10% of tumor cells, respectively, showed unequivocal membrane staining (17, 18). Basal cells, in the normal respiratory epithelium, showed immunoreactivity and were used as an internal positive control. The alveolar epithelium was used as an internal negative control.
15% and <15% of the cells, respectively, were immunoreactive. Specimens were also scored according to the location of the staining (nuclear and/or cytoplasmic). Endothelial cells were used as internal positive controls. Normal lung tissue was used as an internal negative control (20).
50%), 2 (51-75%), 3 (76-85%), and 4 (>85%) according to the percentage of tumor cells that were immunoreactive. The sum of the intensity and extent of scoring was used as the final staining score (0-7). Tumors with a final score of
5 were considered positive or high-intensity, whereas those with a final score of <5 were negative or low-intensity. Endothelial cells and lymphocytes were used as internal positive and negative controls, respectively. In normal respiratory epithelium, weak to moderate phospho-S6 reactivity was detected in the cytoplasm of all layers. The alveolar epithelium also showed weak/medium immunoreactivity for phospho-S6 (21).
Statistical analysis. Frequencies were compared either by Fisher's exact test or the
2 contingency test, as appropriate. Differences of P < 0.05 were considered statistically significant. Analyses were carried out with the SSPS program, version 10.0.5 (SSPS Inc., Chicago, IL).
| Results |
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| Discussion |
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The activation of the tyrosine kinase activity of EGFR or HER2 switches on intracellular signaling cascades that include the ras/MAP signal transducers (5). We observed a lack of simultaneous mutations at EGFR and KRAS genes, which is consistent with the widely accepted hypothesis that only one component of a cancer pathway needs to be genetically inactivated/activated for neoplastic clonal expansion to occur and with previously published data (6, 12). On the other hand, although p53 and EGFR mutations frequently coexisted in the same tumor specimen, here we confirmed previous observations on the low frequency of G:C-to-T:A transversions in the p53 gene in EGFR-mutant tumors (6). Because these types of p53 mutations are typically associated with tobacco carcinogens (26), our observations are further evidence of the biological relevance of EGFR mutations in nontobacco-related lung adenocarcinomas.
EGFR gene amplification is also present in a subset of lung tumors (27, 28). Our data imply that EGFR amplification is always accompanied by increased protein expression and that this prevails in tumors carrying EGFR mutations. The biological significance of the coexistence of EGFR mutations and gene amplification in the same tumor specimen is not obvious. Because of the large number of extra copies, amplification of EGFR gene in lung tumors is unlikely to arise stochastically and should confer a growth advantage on the tumor cell, even in the presence of gene mutations. An important question requiring an answer is whether there is selective amplification of the mutant or wild-type allele. Previous investigations reported only EGFR mutant bands in the chromatograms in some lung primary tumors and cell lines, without a detectable background of normal DNA (4, 6). This is especially intriguing in primary tumors in which contamination with normal stromal cells is unavoidable. Several mechanisms, including gene amplification of the mutant allele and loss of the wild-type allele, have been proposed (6, 12, 29). For example, in one of the largest series to date, 40% of the electropherograms suggested amplification of the mutant allele (12). Our present data support the hypothesis that gene amplification of the mutant allele is the most plausible explanation for these observations. However, and although interpreted solely on the basis of DNA sequencing, the mutant allele did not always seem to be the target of EGFR amplification. Regardless of the biological significance, these observations raise concerns about the masking effect that gene amplification of the wild-type allele might have in the detection of EGFR gene mutations and so in the identification of patients who might benefit from tyrosine kinase inhibitor treatments. In this regard, it is interesting to note that high EGFR gene copy number has been recently proposed as a predictor for gefitinib efficacy (28, 30, 31).
Finally, we observed that, unlike in their wild-type counterparts, lung adenocarcinomas carrying activating gene alterations in EGFR or KRAS have higher levels of phospho-S6, a ribosomal protein that is phosphorylated by the mTOR-substrate, S6 kinase. Our present data confirm, in primary tumors, recent observations that the phosphoinositide-3-kinase/AKT/mTOR pathway can mediate signaling of tyrosine kinase receptors, also via RAS, and that RAS plays a critical role in activating mTOR in both normal and tumorigenic settings (32).
On the other hand, increased levels of phopsho-AKT protein have been proposed as a marker of gefitinib sensitivity (28, 33), although no significant correlation has been observed between the presence of EGFR mutations and phospho-AKT overexpression (33). Following this line of reasoning and taking into account that 40% to 90% of adenocarcinomas may contain areas of BAC (25), phospho-S6 immunohistochemistry may prove useful to select tumors for EGFR mutation testing.
In conclusion, we have further determined the genetic and molecular context in which EGFR mutations arise, which helps to elucidate their biological role and provides additional information for the selection of patients who could be candidates for EGFR mutation analysis.
| Acknowledgments |
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| Footnotes |
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The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked advertisement in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
Received 6/22/05; revised 10/ 7/05; accepted 11/22/05.
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