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Human Cancer Biology |
Authors' Affiliations: Departments of 1 Pathology and 2 Medicine and 3 The Ontario Cancer Institute, Princess Margaret Hospital, University Health Network, University of Toronto, Toronto, Ontario, Canada
Requests for reprints: Sylvia L. Asa, The Ontario Cancer Institute, 610 University Avenue #8-327, Toronto, Ontario, Canada M5G-2M9. Phone: 416-340-4802; Fax: 416-340-5517; E-mail: sylvia.asa{at}uhn.on.ca.
| Abstract |
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Experimental Design: cDNA microarray analysis was done on human WRO thyroid cancer cells transfected with FGFR2-IIIb or empty vector. Identified gene target was confirmed by reverse transcription-PCR and Western blotting. Gene regulation was examined by treatment of WRO cells with the methylation inhibitor 5'-azacytidine followed by methylation-specific PCR and reverse transcription-PCR and by chromatin immunoprecipitation.
Results: Gene expression profiling identified the cancer/testis antigen MAGE-A3/6 as a novel target of FGFR2-IIIb signaling. MAGE-A3/6 regulation was mediated through DNA methylation and chromatin modifications. In particular, FGF7/FGFR2-IIIb activation resulted in histone 3 methylation and deacetylation associated with the MAGE-A3/6 promoter to down-regulate gene expression.
Conclusions: These data unmask a complex repertoire of epigenetically controlled signals that govern FGFR2-IIIb and MAGE-A3/6 expression. Our findings provide insights into the interrelationship between novel tumor markers that may also represent overlapping therapeutic targets.
Fibroblast growth factors (FGF) and FGF receptors (FGFR) have been implicated in the progression of endocrine neoplasms including thyroid carcinoma (3, 4). FGFs, a family of 23 known heparin-binding proteins, signal through four high-affinity tyrosine kinase receptors (FGFR1-FGFR4; refs. 4, 5). Each receptor has three immunoglobulin-like extracellular domains; alternative splicing of the third immunoglobulin-like domain of FGFR1 to FGFR3 results in two major transcripts referred to as IIIb and IIIc isoforms. These isoforms display distinct FGF binding with differing functional properties (4, 6).
We have shown previously that FGFR expression is dysregulated in human thyroid tumors and cell lines (3). FGFR2 is consistently detected in normal thyroid tissues; its expression was diminished in thyroid tumors and in six carcinoma cell lines (3), due to down-regulation by DNA promoter methylation (7). Moreover, whereas FGFR1 promotes thyroid cell growth, FGFR2-IIIb displays a protective role against cancer progression in transformed thyroid carcinoma cells (7). These findings prompted us to investigate putative targets of FGFR2-IIIb, the major isoform of FGFR2 expressed in epithelial cells, through gene expression profiling. The current data unmask a novel relationship with the melanoma-associated antigen-A3 and A6 (MAGE-A3/6). Further, we show that these two genes are governed by common epigenetic mechanisms.
| Materials and Methods |
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Vector constructs and stable cell transfection. Full-length human FGFR2-IIIb cDNA (established by Drs. M. Terada and T. Yoshida, National Cancer Institute, Tokyo, Japan) in pcDNA1/Neo expression vector (Invitrogen) and a control empty vector (pcDNA1/Neo) were kindly provided by Dr. F. Radvanyi (Centre National de la Recherche Scientifique, Paris, France). The expression vectors were transfected into cells using LipofectAMINE (Invitrogen). Stable clones were selected and maintained in a growth medium containing 1 mg/mL geneticin (Life Technologies) as described previously (7). Alteration of FGFR2 expression was confirmed by Western blotting.
Growth factor stimulation. After overnight starvation in serum-free medium, cells were treated with varying doses of FGF7 (Sigma), each with 10 units/mL heparin (Sigma) in serum-free medium for 24 h at 37°C. Identical volume of vehicle served as control.
Oligonucleotide microarray analysis. Total RNA was extracted from cultured cells with Trizol (Invitrogen) and purified using an RNeasy kit (Qiagen, Inc.). Array hybridization to the Affymetrix U133Plus2 GeneChip was conducted at The Center of Applied Genomics (Hospital for Sick Children, Toronto, Ontario, Canada). RNA from two independent FGFR2-IIIb clones and two independent control clones transfected with vector alone (pcDNA) was subjected to in vitro transcription, labeling, and hybridization using standard Affymetrix protocols. Hybridized chips were washed and scanned on an Affymetrix GeneChip 3000 confocal scanner. Raw microarray data were analyzed by ArrayAssist software (Iobion) using the PLIER algorithm. Genes were considered to be differentially expressed if the signal changed at least 2-fold (or signal log 2 ratio 1). The four data sets (two for FGFR2-IIIb and two for pcDNA controls) were analyzed using gene expression and statistical tools in Spotfire's DecisionSite software package. To identify gene targets that had significantly altered gene expression in FGFR2-IIIb–transfected clones versus pcDNA, groups were compared with each other using the Student's t test. Target genes were further restricted on filtering for a minimum 2-fold up or down change in signal log ratio, respectively. Gene targets were then characterized and graphically summarized based on similar expression profiles using Hierarchal and K-Means Clustering. These clustering algorithms were able to further elucidate intrinsic grouping of the significant genes based on two different statistical methods (hierarchical and exclusive clustering).4
RNA extraction and reverse transcription-PCR analysis. Total RNA was isolated from cultured cells and frozen human thyroid tissue using Trizol. cDNA was generated using the Taqman Reverse Transcription Reagent kit (Applied Biosystems). PCR primers to amplify FGFR2-IIIb, MAGE-A3/6, and PGK-1 (as an internal control) are listed in Table 1 . Amplicons were designed to span introns to exclude genomic DNA contamination. Amplification was done using HotStarTaq DNA polymerase kit (Qiagen). PCR conditions were as follows: (a) 95°C for 15 min; (b) 30 cycles of 94°C for 30 s, 56°C or 58°C for 30 s, and 72°C for 1 min; (c) 72°C for 10 min; and (d) 4°C hold. Negative controls omitting reverse transcriptase and positive controls were included in each PCR.
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Equal amounts of protein (40 µg) solubilized in sample buffer were separated on 10% SDS polyacrylamide gels and transferred electrophoretically to polyvinylidene difluoride membranes. Membranes were blocked in TBS containing 0.5% Tween 20 plus 5% nonfat dried milk for 1 h at room temperature and probed with primary antibodies at 4°C overnight.
Primary antisera or monoclonal antibodies were used at the specified dilutions: anti–MAGE-A3 (1:500; Abgent) and anti-actin (1:1,000; Sigma). The antibody to MAGE-A3 also detects MAGE-A6 because of the high protein sequence homology. Membranes were washed three times for 10 min each in TBS containing 0.5% Tween 20 and incubated with horseradish peroxidase–conjugated goat anti-rabbit or anti-mouse secondary antibody (1:2,000; Santa Cruz Biotechnology) for 1 h at room temperature. Targeted proteins were visualized using an enhanced chemiluminescence detection system (Amersham).
5'-Azadeoxycytidine and trichostatin-A treatment. Cells were plated at a density of 5 x 105 per 10-cm dish and incubated in growth medium without or with the demethylating agent 5'-azadeoxycytidine (AZA; 10 µmol/L; Sigma) for 72 h. For histone deacetylase (HDAC) inhibition, trichostatin-A (TSA; 0.3 µmol/L; Sigma) was applied for 24 h. The equivalent volume of vehicle (50% acetic acid for AZA or 100% ethanol for TSA) was applied as control.
Bisulfite treatment and methylation-specific PCR assay. Genomic DNA was extracted from AZA-treated or untreated cells by proteinase K digestion and phenol/chloroform extraction. Denatured DNA was modified by bisulfite under conditions that convert all unmethylated cytosines to uracils using CpGenome DNA modification kit (Chemicon International). Primers were designed to amplify the corresponding CpG island region including noncoding exon 1 of MAGE-A3 genomic DNA using MethPrimer software (Table 1; ref. 9). Amplification was done in a reaction volume of 50 µL containing 40 ng of bisulfite-treated DNA, 1 x PCR buffer, 3.0 mmol/L MgCl2, 0.25 mmol/L of each deoxynucleotide triphosphate, 0.5 µmol/L of each primer, and 1.25 units HotStarTaq DNA polymerase. PCR conditions were as follows: (a) 95°C for 15 min; (b) 30 cycles of 94°C for 30 s, 58°C for 30 s, and 72°C for 1 min; (c) 72°C for 10 min; and (d) 4°C hold. Negative and positive controls were included for all PCRs.
Chromatin immunoprecipitation assays. The chromatin immunoprecipitation (ChIP) assay was done in accordance with the manufacturer's recommendations (Upstate Biotechnology) and as described previously (10). Briefly, histone was cross-linked to DNA by the direct addition of 37% formaldehyde, cells were washed with cold PBS containing protease inhibitors before lysing cells, and the lysates were sonicated to shear DNA lengths between 200 to 1,000 bp. After centrifugation, cell suspensions were further diluted and 20 µL lysate from each sample was kept and used to quantitate the amount of DNA present (input DNA) for PCR detection. The rest of the lysate was cleared with salmon sperm DNA/protein G-agarose beads. Immunoprecipitation was done using anti–acetylated histone H3 or anti–methylated histone 3 (Lys9) antibodies (both from Upstate Biotechnology). Incubation with antibody was carried out overnight at 4°C with agitation. Negative controls omitted antibody or used an anti-IgG antibody. For PCR analysis, the histone-DNA cross links of eluates were reversed at 65°C, and the immunocomplexes were digested with proteinase K for 1 h at 50°C, and DNA was purified by phenol extraction and used for PCR amplification. PCRs were designed to amplify the corresponding CpG island region including noncoding exon 1 of MAGE-A3 genomic DNA (Table 1). Experiments were done on three independent occasions with product intensities quantified by scanning densitometry (Quantity One software; Bio-Rad).
| Results |
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Reciprocal expression of MAGE-A3/6 and FGFR2-IIIb in normal thyroid and thyroid carcinoma cell lines. We determined the expression profiles of MAGE-A3/6 in relation to FGFR2-IIIb expression in transformed and nontransformed thyroid follicular cells. MAGE-A3/6 was detected by RT-PCR in four of six thyroid carcinoma cell lines; in contrast, only a faint signal was found in normal thyroid tissue specimens (Fig. 2A ). We reported previously that FGFR2 protein is expressed in normal thyroid and is undetectable in seven of eight human thyroid carcinoma cell lines (TPC-1, NPA, 8505C, WRO, MRO, DRO, and ARO; only KTC-1 cells express FGFR2; refs. 3, 7). Papillary thyroid carcinoma-derived KTC-1 cells express FGFR2-IIIb (Fig. 2A). These same cell lines showed that MAGE-A3/6 expression is reciprocally expressed with undetectable levels of expression in normal thyroid tissue. In contrast, thyroid cancer cell lines were more likely to show MAGE-A3/6 expression. Thus, seven of eight thyroid carcinoma cell lines that were MAGE-A3/6 positive were negative for FGFR2-IIIb expression.
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MAGE-A3/6 expression is governed by epigenetic regulation in thyroid carcinoma cell lines. Having determined that FGFR2-IIIb signaling can modulate MAGE-A3/6 expression in thyroid carcinoma cells, we examined the underlying mechanism of MAGE-A expression that is regulated by FGFR signaling. As shown in Fig. 3A , a large CpG island is located in the promoter region surrounding the noncoding exon 1 of human MAGE-A3 DNA (9). Methylation-specific PCR (MSP) and ChIP primers designed for the MAGE-A3 promoter also coamplify the MAGE-A6 promoter, which is indistinguishable from MAGE-A3 promoter CpG islands. MSP analysis showed amplification of CpG-methylated MAGE-A3/6 genomic DNA and no amplification of unmethylated DNA in normal thyroids (Fig. 3B). Reciprocally, unmethylated PCR products of MAGE-A3/6 were observed in five of six thyroid carcinoma cell lines. A parallel assessment of the FGFR2 promoter also showed a reciprocal pattern with that associated with MAGE-A3/6. Namely, CpG methylation of the FGFR2 promoter was evident in tumor cell lines with contrasting lack of methylation in normal thyroid (Fig. 3B). These combined MSP and expression analyses suggested a possible role for DNA methylation in modulating the reciprocal expression of FGFR2 and MAGE-A3/6 in normal and neoplastic cells.
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FGFR2-IIIb expression and FGF7 ligand activation modulate histone H3 associated with MAGE-A3/6 promoters in thyroid carcinoma cells. To determine the state of histone modifications surrounding the MAGE-A3/6 promoter region, we did ChIP assays. As shown in Fig. 4A (top), WRO cells expressing FGFR2-IIIb revealed evidence of diminished histone H3 acetylation associated with the MAGE-A3/6 promoter compared with pcDNA-transfected control WRO cells. Further activation of FGFR2-IIIb using its selective ligand FGF7 resulted in progressive deacetylation of histone H3 associated with MAGE-A3/6 promoter (Fig. 4B, top). Moreover, examination of histone H3 methylation revealed enhancement of this modification in response to FGFR2-IIIb expression or FGFR2-IIIb activation through FGF7 treatment (Fig. 4A and B, bottom).
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| Discussion |
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The FGFR2-IIIb isoform is typically restricted to epithelial cells, whereas FGFR2-IIIc is characteristic of mesenchymal lineages (12, 13). Targeted disruption of FGFR2-IIIb causes agenesis of the lungs, anterior pituitary, thyroid, teeth, and limbs (14). Consistent with these observations, FGFR2-IIIb was readily detected in normal thyroid tissues while it is striking down-regulated in most thyroid carcinoma cell lines through hypermethylation of CpG dinucleotides at the 5'-end of the FGFR2 gene. Down-regulation of FGFR2 has also been reported in several human neoplasms, including astrocytomas, bladder and prostatic carcinomas, pituitary adenomas, and thyroid carcinomas (3, 6, 14, 15). Moreover, forced FGFR2-IIIb expression significantly retards cancer cell proliferation (15–17) and enhanced FGFR2-IIIb signaling imposes on the BRAF/mitogen-activated protein kinase pathway to modulate thyroid carcinoma cell behavior (7). In this study, we identified MAGE-A3/6 as a putative target of FGFR2-IIIb by gene profiling in thyroid carcinoma cells.
MAGE-A3 and MAGE-A6 genes are members of the MAGE-I family that includes the MAGE-A, MAGE-B, and MAGE-C subfamilies (18). The MAGE-I family consists of a large number of chromosome X–clustered genes, which are expressed nearly exclusively in testicular germ cells, placenta, and various malignant tumors, and hence the designation as cancer/testis antigens (18–22). Our current data confirm a previous report that MAGE-A3/6 is expressed in thyroid carcinomas but not in normal thyroid tissues (23). Although restrictive expression of MAGE-A3/6 suggests a putative target of immunotherapy for thyroid cancers, their functions in thyroid cancer remain to be elucidated. However, it was reported recently that MAGE-A genes, including MAGE-A3/6, target wild-type p53 transactivation through HDAC recruitment (24). MAGE-A3/6–specific small interfering RNA suppresses growth of neoplastic mast cells in vitro and in vivo murine model of mastocytosis (25). These findings suggest cancer-promoting properties of MAGE-A genes.
Our data point to several putative mechanisms underlying the loss and gain of expression of the MAGE-A3/6 in thyroid cancer. Previous reports implicated CpG methylation status in the 5'-region of MAGE-A genes in the process of regulation (26, 27). Correspondingly, CpG methylation status was closely linked with MAGE-A3/6 expression in normal thyroids and thyroid carcinoma cells. We found the MAGE-A3/6 promoter to be hypomethylated in thyroid carcinoma cell lines in contrast to the DNA hypermethylation in normal thyroids. In addition, we showed up-regulation of MAGE-A3/6 genes following treatment with the demethylating agent AZA and more effectively with the combined use of AZA and the HDAC inhibitor TSA. One previous report also noted that TSA enhanced AZA-mediated MAGE-A3 transcription in different cell lines (27). Taken together, these findings provide evidence of epigenetic regulation through DNA methylation as well as histone modifications as putative mechanisms governing MAGE-A3/6 expression.
Our current study shows, for the first time, that MAGE-A3/6 is potently down-regulated by forced expression of FGFR2-IIIb– and/or FGF7-selective ligand stimulation in thyroid carcinoma cell lines. More importantly, we show that FGFR2-IIIb–generated signals can impose on histone modifications in targeting the MAGE-A3/6 promoter. Chromatin modification by mitogen-activated protein kinase signaling has gained attention recently (28). In particular, stimulation of Ras/Raf/mitogen-activated protein kinase signaling results in phosphorylation of multiple downstream targets, and eventually, the phosphorylation of Ser10 and Ser28 on histone H3 is one early downstream event (28). Mitogen-activated protein kinase–mediated histone H3 phosphorylation has been linked with immediate-early gene induction (29–31). Our current and previous data suggest that FGFR signaling epigenetically modulates MAGE-A gene expression in thyroid cancers. Gene expression and CpG methylation status of FGFR2-IIIb and MAGE-A3/6 were reciprocal in normal and thyroid carcinoma cells. In addition, FGFR2-IIIb, a putative tumor-retarding factor (7), can participate in epigenetic modifications of MAGE-A3/6 genes and lead to their down-regulation.
Epigenetic gene silencing of other tumor suppressor genes, including E-cadherin, PTEN, and RASSF1A, and of differentiation-related genes, such as thyroid-stimulating hormone receptor and the sodium-iodide symporter, is known in thyroid cancers (2, 32). In addition, AZA or HDAC inhibition restores thyroid-specific gene expression including sodium-iodide symporter in dedifferentiated carcinoma cells; this approach has been proposed for differentiation-inducing therapy (33, 34). However, our current study shows that the demethylating agent can up-regulate MAGE-A3/6 gene expression, at least in thyroid carcinoma cells. These observations suggest that further studies should be pursued to determine the potential application of demethylating agents alone or in combination with other classes of antitumor agents, in the pharmacotherapy of thyroid cancer.
In conclusion, our data identify a reciprocal expression profile of FGFR2-IIIb and MAGE-A3/6 in thyroid carcinomas and normal thyroid tissue. Whereas FGFR2-IIIb plays a well-recognized tumor-suppressive role, MAGE-A3/6 is considered to harness growth-promoting functions (24, 25). Our data highlight MAGE-A3/6 as a novel downstream target of FGFR2-IIIb. These findings underscore the complex network of epigenetic changes and their actions in modulating signals of opposing functions. Clearly, pharmacotherapeutic approaches based on epigenetic mechanisms will require selective targeting for more effective disease control.
| Footnotes |
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The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked advertisement in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
4 http://www.biomedcentral.com/1471-2105/5/103 ![]()
Received 3/15/07; revised 5/15/07; accepted 5/21/07.
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This article has been cited by other articles:
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