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Cancer Therapy: Clinical |
Authors' Affiliations: 1 Division of Hematology and Oncology, Department of Medicine, 2 Division of Pharmaceutics, College of Pharmacy, and 3 The Comprehensive Cancer Center, The Ohio State University, Columbus, Ohio; and 4 Cancer Therapy Evaluation Program, National Cancer Institute, Bethesda, Maryland
Requests for reprints: Guido Marcucci, Division of Hematology and Oncology, Department of Medicine, The Ohio State University, A437A Starling-Loving Hall, 320 West 10th Avenue, Columbus, OH 43210. Phone: 614-293-5738; Fax: 614-293-7525; E-mail: guido.marcucci{at}osumc.edu.
| Abstract |
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Experimental Design: Twenty-three adults (ages 18-59 years) were enrolled in this dose escalation phase I trial, receiving high-dose AraC twice daily combined with infusional GTI-2040. An ELISA-based assay measured plasma and intracellular concentrations of GTI-2040. R2 protein changes were evaluated by immunoblotting in pretreatment and post-treatment bone marrow samples.
Results: The maximum tolerated dose was 5 mg/kg/d GTI-2040 (days 1-6) and 3 g/m2/dose AraC every 12 hours for 8 doses. Neurotoxicity was dose limiting. Eight patients (35%) achieved complete remission. Mean bone marrow intracellular concentration of GTI-2040 were higher at 120 hours than at 24 hours from the start of GTI-2040 (P = 0.002), suggesting intracellular drug accumulation over time. Reductions in bone marrow levels of R2 protein (>50%) were observed at 24 and 120 hours. Higher baseline R2 protein expression (P = 0.03) and reductions after 24 hours of GTI-2040 (P = 0.04) were associated with complete remission.
Conclusions: GTI-2040 and high-dose AraC were coadministered safely with successful reduction of the intended R2 target and encouraging clinical results. The clinical efficacy of this combination will be tested in an upcoming phase II study.
Inhibition of the ribonucleotide reductase (RNR) has the potential to increase AraC cytotoxicity. Composed of two subunits, R1 and R2, RNR is required for the reductive conversion of ribonucleotides to deoxynucleotides, a crucial rate-limiting step during DNA synthesis and repair (8, 9). Overexpression of RNR, commonly found in malignant cells, increases the endogenous pool of deoxynucleoside triphosphates, a potential mechanism of chemoresistance to nucleoside analogues competing for DNA incorporation (10–15).
Antisense oligodeoxynucleotides are short DNA molecules that can interfere with gene expression by forming duplexes with complementary sequences of target mRNAs (16–18). GTI-2040 is a 20-mer phosphorothioate oligonucleotide antisense that is complementary to the R2 component of RNR. Thus, we hypothesized that treatment with GTI-2040 induces down-regulation of RNR and, when combined with high-dose AraC (HiDAC), results in enhanced AraC cytotoxicity by creating an imbalance in dCTP pools that favors DNA incorporation of Ara-CTP. To test this hypothesis, we conducted a phase I study of GTI-2040 in combination with HiDAC in AML. The primary study objectives were to describe the safety and tolerability of the regimen and validate R2 as an in vivo target for GTI-2040 in AML.
| Patients and Methods |
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2, left ventricular ejection fraction
50%, adequate hepatic (total bilirubin <2 times the upper limit of normal and aspartate amino transferase/alanine amino transferase <3 times the upper limit of normal), and adequate renal function (creatinine <1.5 mg/dL) were required unless laboratory abnormalities were attributed to underlying disease. The protocol was reviewed and approved by the local institutional review board. In accordance with the Declaration of Helsinki, informed consent was obtained from all patients before study entry. The dose escalation schema is detailed in Table 1 . The starting dose of GTI-2040 was selected to be approximately 80% of the total dose of GTI-2040 administered safely during single agent solid tumor phase I studies (19). GTI-2040 infusion was followed by initiation of HiDAC to induce down-regulation of RNR before AraC exposure. We hypothesized that down-regulation of RNR could result in depletion of endogenous deoxyribonucleotides and preferential incorporation of AraC in the newly synthesized DNA of proliferating malignant blasts, thereby causing a high degree of cytotoxicity. The starting dose of GTI-2040 was chosen due to concern for potential added toxicity when combined with HiDAC. GTI-2040 was initially administered as a continuous i.v. infusion at 3.5 mg/kg/d (days 1-7), and AraC was infused over 2 h every 12 h at 2 g/m2/dose on days 2 to 7. The dose escalation schema was subsequently amended after one grade 3 neurotoxicity was seen on level 1 (Table 1).
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Analysis of plasma and intracellular levels of GTI-2040. Levels of GTI-2040 in plasma and lysates from bone marrow mononuclear cells (MNC) were measured using a novel hybridization-ligation-based ELISA assay developed and validated in our laboratory and shown to have a lower limit of quantification of 50 pmol/L and linearity from 50 to 10,000 pmol/L for GTI-2040 (22, 23). Briefly, a capture oligodeoxynucleotide (5'-TAACTAGTGCTTGGTGGAGCGATTTAGCC/3 Biotin-3') was diluted in buffer [60 mmol/L phosphate buffer (pH 7.4), 1.0 mol/L NaCl, 5 mmol/L EDTA, and 0.2% Tween 20], heated at 95°C for 5 min, and mixed with sample. This was incubated at 42°C for 2 h, captured by binding to NeutrAvidin-coated 96-well plates (Pierce), and subsequently washed with buffer (TBS in 0.1% Tween 20). A detection oligodeoxynucleotide probe (5'-CACTAGTTA-3') with phosphate at the 5'-end and digoxigenin at the 3'-end was diluted in ligation buffer [66 mmol/L Tris-HCl (pH 7.6), 10 mmol/L MgCl2, 10 mmol/L DTT, 1 mmol/L ATP] containing 5 units/mL T4 DNA ligase (Amersham Biosciences) and dispensed into wells followed by overnight incubation at 18°C. To remove excess probe bound to capture oligodeoxynucleotide, 60 units S1 nuclease (Invitrogen) in 3 mmol/L sodium acetate (pH 4.6), 1 mmol/L zinc acetate, 100 mmol/L NaCl, and 5% glycerol was added and incubated with samples for 2 h at 37°C. The plate was then washed with buffer. Next, anti-digoxigenin-alkaline phosphatase (1:2,500 with bovine serum albumin block buffer in TBS; Roche) was added. Following 30-min incubation at room temperature, the plate was washed with washing buffer. Attophos substrate (Promega) in diethanolamine buffer prepared as recommended by the manufacturer was added. Fluorescence intensity was measured at excitation 430/emission 560 (filter = 550 nm) using a Gemini XS plate reader (Molecular Devices).
For pharmacokinetic analysis, plasma samples were collected before treatment; at 2, 4, 6, 12, 24, 48, and 72 h from beginning of GTI-2040 infusion; at end of GTI-2040 infusion; and at 0.25, 0.5, 1, 2, 4, 6, 12, 24, and 48 h after drug discontinuation. WinNonlin (version 4.0; Pharsight) was used to fit the plasma concentration-time profiles and calculate the pharmacokinetic variables with appropriate model and model-independent methods.
For quantification of intracellular concentrations, bone marrow samples were collected 24 and 120 h following initiation of the GTI-2040. When adequate cell numbers and immunophenotype were allowed, CD34+ bone marrow MNCs were isolated using MACS CD34 selection columns (Miltenyi Biotec) according to the manufacturer. The effluent cells were
95% CD34+ cells using this approach as assessed by flow cytometry using FITC-conjugated CD34 antibody (Becton Dickinson) and the appropriate isotype-negative control. Pellets of bone marrow MNCs were treated with 0.1 µmol/L phosphorothioate 28-mer polycytidine. After addition of lysis buffer [10 mmol/L Tris-HCl (pH 8.5), 0.5 mmol/L EDTA, and 1% Triton X-100] and incubation on ice for 10 min, the cells were mechanically lysed. The homogenate was centrifuged, and supernatant was used in assays. The measured GTI-2040 levels were converted to intracellular concentration by dividing the GTI-2040 amount by the MNC volume as determined by Samba Image Analyzer 4000 (Imaging Products International). The conversion factor was calculated as 0.035 µg protein equal to 1 µL cell volume or 2 x 106 cell number equal to 1 µL cell volume. Results were similar when instead of the cell volume the measured levels of GTI-2040 in protein lysates were normalized to total protein.
To separate cytoplasm from nucleus in subcellular compartment intracellular concentration analyses, viable bone marrow MNCs were incubated with 0.1 µmol/L PS-dC28 for 2 min on ice and washed again with PBS. Nuclease preparation kit (Molecular Motif) was used to separate cytoplasm and nucleus according to the manufacturer's instruction. Lactate dehydrogenase concentration was measured in the nucleus fraction and in cytoplasm fraction to test for contamination of cytoplasm in the nucleus.
Quantification of R2 expression. For protein analysis, lysates of bone marrow MNCs before treatment, 24 h, and 120 h following GTI-2040 initiation were prepared in cell lysis buffer (Cell Signaling Technology). Standard SDS-PAGE was done as described previously (24). Blots were probed for R2 (Santa Cruz Biotechnology) and glyceraldehyde-3-phosphate dehydrogenase (Santa Cruz Biotechnology). Immunoblots were scanned and quantified using ImageQuant software (Molecular Dynamics), and R2 protein levels were normalized to glyceraldehyde-3-phosphate dehydrogenase.
Statistical considerations. Descriptive statistics (mean, SD, and frequency) were computed for all variables. When large variability in the biological samples was noted, median values were calculated. Groups were compared using Mann-Whitney U tests and ANOVA for continuous data. Paired data were analyzed using the Wilcoxon matched-pairs signed rank test.
| Results |
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1 x 109/L) was 32 days (range, 22-41 days), and the median time to platelet recovery (platelets
50 x 109/L) was 32 days (range, 19-47 days).
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From four patients with CD34+ leukemic blasts and adequate cell numbers, paired CD34+ selected and unselected bone marrow samples were collected and compared. At 120 hours, there was a trend for higher intracellular concentration of GTI-2040 in the CD34+ bone marrow MNCs compared with nonselected bone marrow MNCs (P = 0.20). The median value of GTI-2040 intracellular concentration in CD34+ MNCs was 61 nmol/L (range, 9-118 nmol/L) versus 29 nmol/L (range, 3-36 nmol/L) in unmanipulated MNCs, suggesting a preferential uptake of the antisense by the leukemic cells (data not shown).
Given our previous findings that the efficacy of antisense compounds directly correlates with high nuclear to cytoplasmic ratio of intracellular concentration (22), subcellular distributions of GTI-2040 in cytoplasm and nucleus were examined in bone marrow cells obtained from eight patients. Cytoplasm to nucleus contamination was found to be minimal during the cell fractionation procedure with <10% of the lactate dehydrogenase content found in the nucleus fraction. In seven patients, median intracellular concentration in the nucleus was 3.8 nmol/L (range, 1.0-9.2 nmol/L) and the median intracellular concentration in cytoplasm was 2.5 nmol/L (range, 0.20-19.2 nmol/L). As shown in Fig. 1C, the ratio of nuclear to cytoplasmic intracellular concentration GTI-2040 was greater in patients achieving CR (n = 3; mean, 2.9; range, 2.1-5.0) compared with nonresponders (n = 5; mean, 0.69; range, 0.28-3.6; P = 0.07), suggesting a trend for association of CR with GTI-2040 nuclear localization.
Pharmacodynamic studies. To evaluate changes in the R2 protein target, immunoblotting was done on bone marrow samples collected before treatment and at 24 and 120 hours after initiation of GTI-2040 exposure. Fourteen patients had samples assessable for these time points. A >50% reduction in R2 protein at 24 and 120 hours was seen in two and five patients, respectively. When comparing CR patients (n = 6) and nonresponder patients (n = 8), the former had a significantly higher baseline R2 protein level than the latter (median, 0.99 versus 0.32 R2/glyceraldehyde-3-phosphate dehydrogenase arbitrary units; P = 0.03; Fig. 1D). Furthermore, CR patients had reductions in R2 protein at 24 hours compared with increased levels in nonresponder patients (median, 88% versus 191%; P = 0.04) and 120 hours (median, 48% versus 157%; P = 0.11). These data suggest an association of higher pretreatment levels of R2 and greater target down-regulation with achievement of clinical response.
| Discussion |
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Although clinical response was not a primary endpoint of this trial, we noted encouraging results as 8 of the 23 (35%) patients treated achieved CR. Notably, this population included unfavorable patients with at least one of the following adverse characteristics: primary refractory disease, short CR duration, unfavorable cytogenetics, and prior HiDAC exposure. Seven responders (five with CR and two with significant cytoreduction) were able to successfully undergo myeloablative allogeneic SCT, suggesting that it is feasible to use this regimen as a salvage strategy without additional toxicity and/or preclusion to myeloablative regimens. The clinical response to this regimen and the ability of patients to proceed safely with allogeneic SCT is being tested definitively in a phase II trial.
Extensive pharmacokinetic and pharmacodynamic analyses were conducted in parallel with the clinical trial. Interestingly, no difference in intracellular concentrations between CR and nonresponder patients was noted, underscoring that optimal pharmacologic activity of antisense compounds may not depend only on absolute intracellular concentrations. It is possible, instead, that efficient antisense target down-regulation may also relate to drug levels achievable in distinct subcellular compartments (that is, nucleus versus cytoplasm; ref. 22). In support of this hypothesis, we showed a trend for higher antisense localization in the nuclear compartment in CR patients was observed. Future studies measuring intracellular concentrations in these different subcellular fractions to identify specific patterns of intracellular distribution of the parent drug and its metabolites that correlate with disease response could corroborate this initial observation.
Analysis of CD34+ bone marrow MNCs allowed performance of pharmacokinetic studies directly on leukemic cells, thereby avoiding the potential interference by contaminating nonleukemic cells (that is, normal neutrophils or lymphocytes). Although the small sample number precludes definitive conclusions, we were able to show a trend for preferential accumulation of GTI-2040 in the CD34+ compartment, suggesting successful delivery and accumulation of the antisense in the relevant malignant cell population.
We also observed a previously unreported finding that patients who eventually achieved CR had higher levels of baseline R2 expression than nonresponders. These data therefore suggest that baseline R2 expression should be further explored as a possible predictor for clinical response to GTI-2040, and perhaps it could serve as a marker for treatment stratification to GTI-2040/AraC salvage therapy in patients with relapsed/refractory disease. Additionally, CR patients had a significant reduction in the R2 target following antisense treatment compared with pretreatment baseline. In contrast, nonresponders showed an increase in the target expression following GTI-2040 administration compared with pretreatment baseline. The latter is a phenomenon that we had already reported with other antisense compounds (24). Although mechanistically target up-regulation following antisense treatment remains to be fully elucidated, we postulated that it may be caused by a negative feedback loop that activates transcription in a target gene not functioning to its maximum capacity in malignant cells exposed to antisense compounds (29, 30). While realizing that many other factors may play a role in disease response, the findings reported here are intriguing and support pharmacologic activity of GTI-2040 via down-regulation of the RNR target. Given the limitations intrinsic to the phase I trial design (that is, small numbers of patients treated at different dose levels), future studies are necessary to confirm and extend these observations.
During the design and completion of this study, there was no validated method available for measurement of the deoxynucleoside triphosphate pools. Although GTI-2040 should modulate the deoxynucleoside triphosphate pool based on the intended mechanism of action, we are unaware of any published data in this regard. Since then, we have recently, in a separate preclinical study, shown the GTI-2040 decreases dCTP pool 1- to 2-fold in K562 cells following treatment with 5 µmol/L for 24 hours using our newly developed liquid chromatography-tandem mass spectrometry method (31). Limited sample material prohibits completion of these evaluations in the phase I study reported in this article; however, these studies will be incorporated into future clinical trials.
Finally, one could raise the question of whether inhibition of RNR can be achieved using other, less costly agents such as hydroxyurea rather than antisense compounds. Although laboratory data support the possible role of hydroxyurea in inhibiting RNR by directly reducing the tyrosyl radical of R2 to a normal tyrosine residue via one-electron transfer from the drug (32, 33), the effectiveness of this approach is likely to be limited by the hydroxyurea low affinity for RNR, very high hydrophilicity, short half-life, and early development of mechanisms of resistance (34). The latter is mediated by R2 overexpression via gene amplification and/or alteration in gene transcriptional regulation (35, 36), R2 mutations (37), and increased expression of ferritin-encoding genes that leads to increase in iron levels and reactivation of previously drug-inhibited R2 protein (38).
Based on the results from this current study, we conclude that GTI-2040 in combination with HiDAC is feasible and is active against its target R2. The combination holds promise in younger patients with refractory/relapsed AML. While encouraging, our clinical and pharmacodynamic results require confirmation, and a phase II trial in younger patients with refractory or relapsed AML is under way.
| Disclosure of Potential Conflicts of Interest |
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| Footnotes |
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The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked advertisement in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
Received 1/14/08; revised 2/ 6/08; accepted 2/12/08.
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