
Clinical Cancer Research Vol. 6, 602-609, February 2000
© 2000 American Association for Cancer Research
Molecular Oncology, Markers, Clinical Correlates |
Alterations in the Expression of the DNA Repair/Redox Enzyme APE/ref-1 in Epithelial Ovarian Cancers1
David H. Moore2,
Helen Michael,
Renee Tritt,
Stephen H. Parsons and
Mark R. Kelley
Departments of Obstetrics and Gynecology [D. H. M.], Pathology [H. M.], and Pediatrics [R. T., S. H. P., M. R. K.], Section of Hematology/Oncology, Herman B Wells Center for Pediatric Research [R. T., S. H. P., M. R. K.], Indiana University School of Medicine, Indianapolis, Indiana 46202-5274
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ABSTRACT
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The
DNA base excision repair pathway is responsible for the repair of
alkylation and oxidative DNA damage. A crucial step in the base
excision repair pathway involves the cleavage of an
apurinic/apyrimidinic (AP) site in DNA by an AP endonuclease (APE). The
major AP endonuclease in mammalian cells is APE/ref-1, a
multifunctional enzyme that acts not only as an AP endonuclease but as
a redox-modifying factor for a variety of transcription factors. The
purpose of this study was to determine the expression of APE/redox
factor-1 (ref-1) in ovarian tissues, particularly ovarian cancers.
Formalin-fixed, paraffin-embedded specimens of ovarian tissues (normal,
various benign conditions, and epithelial cancers) were studied using
both polyclonal and monoclonal antibodies to APE/ref-1. The
relationship between APE/ref-1 protein levels and DNA repair activity
was studied in ovarian Hey and Hey-C2 cell lines using Western blot and
a specific AP-site oligonucleotide cleavage assay. Hey and Hey-C2 cells
were fractionated, and the nuclear and cytoplasmic extracts were
quantitated for protein levels and assessed for APE/ref-1 with Western
blot. Normal ovarian tissues consistently demonstrated strong nuclear
staining of the surface epithelium, epithelial inclusions, corpora
lutea and albicantia, and stroma. Cytoplasmic staining was absent. A
similar pattern was seen for benign conditions including endometriosis.
Low malignant potential ovarian cancers stained in a pattern similar to
normal ovarian and nonneoplastic tissues; however, two specimens also
had areas of cytoplasmic staining. Epithelial ovarian cancers were
remarkably different from all other ovarian tissues studied. Both
nuclear and cytoplasmic staining of the malignant epithelium were seen
and ranged from strong to weak, often with considerable staining
heterogeneity within the same tumor. The AP-site oligonucleotide
cleavage assay indicated that APE/ref-1 protein levels correlate well
with DNA repair activity. The increased levels of APE/ref-1 in the
Hey-C2 cells was mainly attributable to increased cytoplasmic enzyme.
APE/ref-1 immunoreactivity is altered in malignant ovarian tumors.
Further studies will determine whether the altered expression and
subcellular location reflect changes in redox regulatory functions.
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INTRODUCTION
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DNA damage occurs as a result of ionizing radiation, UV
irradiation, oxidizing agents, hydrolysis, or alkylating agent
chemotherapy. AP3
sites are the most common form of DNA damage and an estimated
1020,000 apurinic and 500 apyrimidinic sites are produced per
cell/day under normal physiological conditions (1)
. AP
sites may block DNA replication, leading to cytotoxic mutations or
genetic instability (2)
. Several repair pathways have
evolved to repair genomic damage: direct reversal, mismatch repair,
nucleotide excision repair, and base excision repair.
DNA base excision repair involves two major classes of repair enzymes,
the DNA glycosylases and APEs (3, 4, 5)
. Glycosylases remove
damaged bases, creating AP sites that in turn are incised by APE
(APE/ref-1) 5' to the AP site, followed by removal of the abasic
residue and insertion of a new base by DNA ß-polymerase and ligation.
The rate-limiting step in the base excision repair pathway has not been
defined in vivo (6, 7, 8)
. However, in
vitro evidence suggests that APE/ref-1 activity is the
rate-limiting step in the repair of DNA oxidative damage
(9)
.
There is recent evidence that APE/ref-1 expression and base excision
repair capabilities may not be equivalent in all cell types and
tissues. APE/ref-1 is differentially expressed during fetal development
and in the adult rat brain and testis, as well as in various human
tissues (10, 11, 12)
. Little is known about base excision
repair functions in malignant tumors. A significant elevation in
APE/ref-1 expression has been demonstrated in cervical cancer tissues
and cell lines, as well as in germ cell tumors (13
, 14)
.
The expression of APE/ref-1 in ovarian tissues has not been
characterized and is the focus of this investigation.
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MATERIALS AND METHODS
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Tissue.
Ovarian tissues used in this study were obtained by gynecological
surgeons in the Department of Obstetrics and Gynecology at the Indiana
University School of Medicine. Surgical specimens were fixed in 4%
buffered formaldehyde and embedded in paraffin. Archival tissue blocks
from patients determined previously to have normal ovaries, various
nonneoplastic and benign conditions, or epithelial ovarian cancer were
obtained. Tissues were cut in 6-µm sections and fixed on glass
slides. Slides were immunostained and analyzed using a blinded coding
system such that staining procedures and microscopic assessments were
performed without knowledge of the histopathological diagnosis.
Antibody Preparation.
The initial antibody used in these studies was produced using
overexpression of the human APE/ref-1 protein in a
pGEX-glutathione-S-transferase Escherichia coli
system (Pharmacia, Uppsala, Sweden), as described previously (12
, 13
, 15)
, and was obtained from Novus Biologicals (Littleton,
CO). However, we have recently produced a monoclonal antibody that was
subsequently used in the studies presented here. Both polyclonal and
monoclonal antibodies yielded identical results. Antibody purity was
confirmed with Western blot analysis before each use (12
, 13)
, and each batch of slides was simultaneously processed using
the same antibody concentration. Tissues determined previously to
express APE/ref-1 were used as positive controls.
Immunohistochemistry.
Tissue sections were coated with anti-APE antibody (mouse anti-human
APE/ref-1 monoclonal) and incubated overnight at 4°C at a 1:200
dilution in 10% goat serum in PBS. The following day, sections were
washed three times for 5 min in PBS and incubated with biotinylated
goat antimouse IgG (Vector Labs, Burlingame, CA) at 15 µg/ml in 10%
goat serum for 1 h. After two PBS washes for 5 min each, sections
were incubated with avidin and biotinylated horseradish peroxidase
complex (ABC elite kit; Vector Labs) for 45 min. Slides were then
incubated with diaminobenzidine (Vector Labs). After the development of
color signal, the sections were briefly washed in distilled
H2O, counterstained with eosin, dehydrated
through a graded alcohol to xylene sequence, coverslipped, analyzed,
and photographed. As a negative control, preimmune IgG (50 µg/ml) was
used as the primary antibody in place of anti-APE.
Cell Lines.
Two ovarian cancer cell lines, Hey and Hey-C2, were supplied to us by
Dr. Gordon Mills (M. D. Anderson Cancer Center, Houston, TX). The Hey
cells were originally grown from an ovarian adenocarcinoma. By serially
passing Hey cells through athymic mice as i.p. tumors, Dr. Mills
et al. (16)
developed lines, A8 (not shown
here) and C2, that yield aggressive tumors capable of producing ascites
and killing hosts within 45 weeks.
Western Blot Analysis.
Western blots of Hey and Hey-C2 cells were performed using whole-cell
extracts electrophoresed on 12% SDS-PAGE and electroblotted onto 0.2
µm nitrocellulose. Protein levels in the extracts were quantitated
using the Bio-Rad protein assay reagent (Bio-Rad, Hercules, CA), and
equal amounts (20 µg) of protein were loaded/lane. The gels were
transferred for 1 h onto nitrocellulose and stained with
Ponceau Red to confirm equal loading between lanes. The filter
was incubated in blocking buffer that contains 5% nonfat milk for
1 h. Mouse monoclonal antihuman APE/ref-1 (see
"Immunohistochemistry") was used at a dilution of 1:1000 and
incubated with the filter overnight at 4°C. The filter was washed in
TBST and incubated in TBST containing 5% milk and detected
using the Amersham chemiluminescence kit. The bands were visualized
using autoradiographic film and quantitated, after scanning, using
Jandel Scientific SigmaScan software.
AP Oligonucleotide Assay for APE/ref-1 DNA Repair Activity.
A 26-mer tetrahydrofuran-containing oligonucleotide was
32P end-labeled as described previously
(10
, 17, 18, 19)
. Reaction mixtures (10 µl) containing
protein extracts of Hey or Hey-C2 cells, 2.5 pmol of 5'
32P end-labeled double-stranded tetrahydrofuran
oligonucleotide, 50 mM HEPES, 50 mM KCl, 10
mM MgCl2, 2 mM DTT, 1
µg/ml BSA, and 0.05% Triton X-100 (pH 7.5) were allowed to proceed
for 15 min in a 37°C water bath. Reactions were halted by adding 10
µl of 96% formamide, 10 mM EDTA, xylene cyanol, and
bromphenol blue. AP assay products (5 µl) were separated on a 20%
polyacrylamide gel containing 7 M urea. Gels were wrapped
in Saran wrap and exposed to film for visualization. The amount of
14-mer to 26-mer was determined after scanning the exposed film into
SigmaScan.
Cellular Fractionation.
Fractionation of the Hey and Hey-C2 cells into nuclear and cytoplasmic
components was performed according to the method of Tell et
al. (20)
Briefly, cells (106)
were washed in PBS and resuspended in 5 ml of hypotonic lysis buffer A
(10 mM HEPES, 10 mM KCl,
0.1 mM MgCl2, 0.1
mM EDTA, 2 mg/ml leupeptin, 2 mg/ml pepstatin,
and 0.5 mM phenylmethylsulfonyl fluoride, pH
7.9). The cells were allowed to sit for 10 min and were then
homogenized in a Dounce homogenizer for 10 strokes. The nuclei were
collected by centrifugation for 5 min at 500 x g at
4°C in a microcentrifuge. The supernatant (cytoplasmic fraction) was
decanted from the nuclei, and nuclear proteins were extracted with 10
ml of buffer B (10 mM HEPES, 400
mM NaCl, 1.5 mM
MgCl2, 0.1 mM EDTA, 2 mg/ml
leupeptin, 2 mg/ml pepstatin, and 0.5 mM
phenylmethylsulfonyl fluoride, pH 7.9). After incubating for 20 min at
4°C, samples were centrifuged at 12,000 x g at 4°C
for 15 min. Nuclear and cytoplasmic extracts were quantitated for
protein levels (Bio-Rad assay) and used immediately for Western blot
analysis.
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RESULTS
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A total of 38 separate ovarian tissue blocks were processed and
analyzed for APE/ref-1 immunostaining (Table 1)
. Normal ovarian tissues consistently
demonstrated strong nuclear staining of the surface epithelium,
epithelial inclusions, corpora lutea and albicantia, and stroma (Fig. 1)
. In one specimen obtained from a
postmenopausal woman, there were luteinized stromal cells with strong
nuclear staining. Cytoplasmic staining was absent in normal ovarian
tissues.

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Fig. 1. Normal ovary displays strong nuclear staining in
the surface epithelium, stroma, and corpus luteum
(inset). No cytoplasmic staining is seen.
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A similar pattern was seen for benign, nonneoplastic conditions. Strong
nuclear staining was seen in the stroma and in the epithelial cells of
both serous and mucinous cystadenomas (Fig. 2)
. Endometriosis demonstrated moderate
to strong nuclear staining in both glands and stroma elements (Fig. 3)
.

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Fig. 2. Nuclear staining is seen in the epithelium of a
serous cystadenoma and also in the underlying ovarian stroma.
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Fig. 3. Ovarian endometriosis displays strong nuclear
staining in the glandular epithelium and endometrial stroma. Underlying
ovarian stroma (bottom) also shows nuclear staining.
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LMP ovarian cancers stained in a pattern similar to the normal ovarian
and nonneoplastic tissues. Moderate to strong nuclear staining was seen
in the epithelia of all seven LMP tumors; however, two specimens also
demonstrated areas of cytoplasmic staining (Fig. 4)
. Ovarian cancers were remarkably
different from all other tissues studied in the intensity and
subcellular localization of APE/ref-1 immunoreactivity. Nuclear
staining of the malignant epithelium ranged from strong to weak, with
considerable staining heterogeneity noted within the same tumor (Fig. 5)
. Cytoplasmic staining of the malignant
epithelium was frequently encountered and often predominant as the
subcellular location of immunoreactivity (Fig. 6)
. In general, considerable variation
was seen within and between malignant ovarian tumors with respect to
intensity and predominance of nuclear versus cytoplasmic
staining. There appeared to be no relationship between the presence,
intensity, or subcellular location of APE/ref-1 immunostaining and
either tumor grade or histological subtype.

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Fig. 4. Serous tumors of LMP show strong nuclear
staining (left side). Two neoplasms also displayed some
cytoplasmic staining (right side). In these areas, the
nuclei are pale areas encircled by darkly staining cytoplasm.
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Fig. 5. Ovarian serous carcinoma is characterized by
variable nuclear staining. There is strong staining in the right
half of the picture; minimal staining is seen in the
left half of the photograph.
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Using the Hey and Hey-C2 ovarian cancer cell lines, we compared
APE/ref-1 protein levels (Western blots) to DNA repair APE activity
levels. This analysis was performed to begin to understand the
relationship between altered levels of APE/ref-1 and what this altered
expression indicates in the human samples. Is the altered expression of
APE/ref-1 affecting its DNA repair capacity, redox function, or both?
Western blot analysis was performed on the Hey and Hey-C2 cells, and
the data are presented in Fig. 7
. We
detected a >4-fold increase in the level of APE/ref-1 protein. Western
blot analysis of protein extracts from nuclear versus
cytoplasmic components indicated that the overall increased level of
APE/ref-1 in the Hey-C2 cells, relative to the Hey cells, was mainly
attributable to an increase in cytoplasmic levels of the enzyme (Fig. 7)
. These data complemented the clinical data, showing an elevated and
altered expression of APE/ref-1 in the epithelial ovarian tumors and in
repair activity shown in the following experiments.

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Fig. 7. Immunohistochemical and Western blot analysis
of Hey and Hey-C2 cell lines. Panel A,
immunohistochemical staining of Hey (A and
B) and Hey-C2 (C and D)
cells with monoclonal APE/ref-1 antibody. A and
C, x10; B and D, x40.
Panel B, Western blot analysis using monoclonal
APE/ref-1 antibody on Hey and Hey-C2 cells. Total protein extract from
each cell line was run on the gel. Panel C, same blot as
in Panel B, but the blot was reprobed with antibody to
actin to normalize for loading. Panel D, Hey-C2
(Lanes 1 and 2) and Hey (Lanes
3 and 4) cells were fractionated into nuclear
and cytoplasmic components, and equal amounts of protein were run,
followed by Western blot analysis using APE/ref-1 monoclonal antibody
as described in the text.
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To determine whether the changes in APE/ref-1 expression observed at
the protein level translated into changes in APE/ref-1 repair function,
we used a specific AP-site oligonucleotide cleavage assay (Fig. 8)
. As can be seen by the activity assay,
the Hey cell line had no detectable levels <l50 ng of total cell
extract, whereas the Hey-C2 cells (same cell extract as shown in Fig. 7
, Lane 2) still had detectable activity at 40 ng of
cellular extract. Therefore, the Hey-C2 cells demonstrated a >4-fold
increase in APE activity in the AP oligonucleotide assay compared with
the Hey cells. The AP-site oligonucleotide cleavage DNA repair assay
results indicated that APE/ref-1 protein levels (Fig. 7)
correlated
well with appropriate APE/ref-1 repair activity changes (Fig. 8)
.
Assuming this in vitro relationship of increased APE/ref-1
protein signifying increased APE/ref-1 repair activity, then the
increase of APE/ref-1 observed in the immunohistochemical analysis of
human samples could correlate with increased in vivo DNA
repair activity. However, these observations do not preclude additional
alterations in redox functions of the APE/ref-1 protein, given that DNA
repair and redox functions reside in separate domains of the protein.
Thus, if the APE/ref-1 seen in ovarian cancer cells is primarily
functioning as a DNA repair enzyme, its movement out of the nucleus and
into the cytoplasm would have an impact on the ability of this protein
to carry out nuclear DNA repair activities. This could lead to
increased sensitivity of these tumor cells to DNA-damaging agents, or
the tumor cells may accumulate mutations because of decreased base
excision repair, leading to a more aggressive oncogenic phenotype.

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Fig. 8. Functional AP-site oligonucleotide cleavage
assay. A, schematic representation of the APE DNA repair
activity assay. The amount of APE activity is calculated using the
relative amount of the 14-mer oligo fragment compared with the
unreacted 26-mer band. B, Hey and Hey-C2 cell extracts
were incubated with a 32P-labeled 26-mer containing an
artificial AP site and then assayed for cleavage by denaturing SDS-PAGE
as described in "Materials and Methods." The 14-mer band indicates
APE activity. Recombinant APE is included as a positive control.
Dilutions of extracts are shown to demonstrate differences in activity
between the Hey (top) and Hey-C2 (bottom)
extract, which correlates with the Western blot analysis. Lane
APE, a reaction using recombinant APE/ref-1 protein that is
included as a positive control for the assay. In the ovarian cell
extract lanes, an excess of 26-mer is always used to not inhibit the
reaction because of substrate limitation.
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DISCUSSION
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AP sites are possibly the most common DNA lesions and may occur
spontaneously or during the repair of modified bases. Base excision
repair of AP sites requires multiple steps, beginning with the cleavage
of the DNA strand adjacent to AP sites. DNA strand cleavage is
catalyzed by an APE (APE/ref-1) and occurs 5' to the AP site (3
, 4)
. APE/ref-1 is believed to be the rate-limiting step in the
base excision repair pathway. The reduction of APE/ref-1 levels by
antisense RNA sensitizes cells to oxidative damage and to various
DNA-damaging agents (21, 22, 23)
, and APE/ref-1 knockout mice
are lethal very early in embryonic development (24)
.
There is accumulating evidence that APE has additional cellular
functions beyond DNA repair. Xanthoudakis et al.
(25)
identified a human gene encoding a product involved
in the redox-activated DNA binding of several transcription factors
including FOS, JUN, and nuclear factor-
B. The gene product (ref-1)
proved to be identical to APE. A number of other transcriptional
activators are also regulated by redox modulation including: c-myb,
Ets, early growth response-1, the glucocorticoid receptor, members of
the activating transcription factor/cAMP-responsive element binding
family, and HIF-1
(26, 27, 28, 29, 30, 31)
. Redox regulation of
transcription factors may therefore exert an enormous influence on
cellular physiology, the end result being a net effect of positive and
negative interactions between the various transcription factors and
their downstream targets or effector genes.
Recently, it has been shown that the redox state of p53 affects its
ability to bind to specific DNA sequences and subsequently regulate the
transcription of adjacent genes (32)
. The p53 redox state
can be altered in vivo with increased oxidation, correlating
with an impaired ability to effect downstream functions
(33)
. It is not surprising that APE/Ref-1 has been shown
to be an important regulator of p53 function through both
redox-independent and -dependent means (34
, 35)
. These
findings, along with the fact that hypoxic stresses induce the
accumulation of both APE/ref-1 and p53, suggest plausible links between
oxidative damage, the activation of DNA repair and redox
transcriptional functions, and consequent influences on cellular
proliferation and apoptotic processes.
In this study, we found marked differences in the pattern and intensity
of APE/ref-1 immunostaining in ovarian cancer specimens
versus all other ovarian conditions: normal ovaries, benign
lesions, and LMP ovarian cancers. Strong nuclear staining was found in
cells of the normal ovary surface epithelium, the epithelium of benign
tumors and endometriosis, and the epithelium of LMP tumors. In
contrast, nuclear staining of cells in the epithelium of ovarian
malignancies ranged from strong to weak, with considerable staining
heterogeneity frequently found within the same tumor. Cytoplasmic
staining was frequently encountered in ovarian malignancies and often
the predominant site of APE/ref-1 immunoreactivity. Two LMP tumors also
had infrequent areas of cytoplasmic staining. These immunohistochemical
differences parallel the clinical differences in the respective ovarian
states. Although LMP tumors may metastasize, they are generally
associated with a good prognosis and may be treated with conservative
surgery and without need for adjuvant chemotherapy (36
, 37)
. Clinical data for the patients from whom specimens were
obtained are unknown. It would be interesting to know whether the two
LMP tumors with (infrequent) APE/ref-1 cytoplasmic immunoreactivity
came from patients with metastatic disease.
On the basis of our observations, wide variations in nuclear staining
intensity and the presence of strong cytoplasmic staining in ovarian
tissues are correlates of malignant behavior. In previous studies,
APE/ref-1 expression during fetal development and in a variety of adult
tissues was predominantly nuclear, although cytoplasmic staining was
seen in certain parts of the brain and in the liver (10
, 12)
. Using animal models, others have reported both nuclear and
cytoplasmic APE/ref-1 expression in certain brain tissues (pyramidal
neurons of the hippocampus and granular cells of the dentate gyrus) in
response to ischemia (38)
. APE/ref-1 expression is
markedly elevated in preinvasive and invasive cervical neoplasia
(13)
and in germ cell tumors (14)
but is
exclusively nuclear. Our observations in ovarian tumors parallel those
by Kakolyris et al. (39)
, who reported a marked
disruption in the APE/ref-1 staining pattern in colonic
adenomas/carcinomas. In the normal colonic mucosa, APE/ref-1 staining
was predominantly nuclear in the lower part of the crypts (less
differentiated cells) and cytoplasmic in the superficial colonic
epithelium (more differentiated cells). The expression and localization
of APE/ref-1 in hyperplastic polyps were similar to the normal colonic
epithelium. For adenomas and carcinomas, however, immunostaining was
exclusively cytoplasmic in 37 and 50%, respectively, and both nuclear
and cytoplasmic staining were seen in 53% of adenomas and 39% of
carcinomas (39)
.
The implications of cytoplasmic staining in ovarian tumors are unknown.
We cannot determine by these studies the in vivo functional
status of APE/ref-1 but can only speculate whether the observed
differences in ovarian malignancies represent alterations in DNA repair
functions, redox functions, or both. Increased expression does not
signify that both DNA repair and redox functions are changed. The DNA
repair and redox activities of APE/ref-1 reside in two separate
domains, with the NH2 terminus primarily involved
in redox regulation and the COOH terminus primarily involved in DNA
repair (30)
. The DNA repair activity of APE/Ref-1 may be
inactivated by phosphorylation (19)
. Furthermore, AP sites
may occur in mitochondrial DNA as a result of oxidative damage, and
base excision repair is important for the repair of AP sites in
mitochondrial DNA (40
, 41) . Thus, APE/ref-1 may have both
cytoplasmic and nuclear functions in base excision repair.
Given the abundance of APE/ref-1 and its pleiotropic cellular
functions, further work will likely identify a number of
posttranslational events for regulating specific APE/ref-1 activities.
A greater understanding of alterations in base excision repair and
redox functions of APE/ref-1 in human cancers has epidemiological and
therapeutic significance.
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FOOTNOTES
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The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked advertisement in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
1 Supported by NIH/National Cancer Institute
Program Project Grant PO1-CA75426 and NIH Grants RR09884 and ES07815
(all to M. R. K.). 
2 To whom requests for reprints should be
addressed, at Department of Obstetrics and Gynecology, Indiana
University School of Medicine, 535 Barnhill Drive, RT 433,
Indianapolis, IN 46202-5274. Phone: (317) 274-2422; Fax:
(317) 274-4878. 
3 The abbreviations used are: AP,
apurinic/apyrimidinic; APE, AP endonuclease; ref-1, redox factor-1;
LMP, low malignant potential. 
Received 7/ 9/99;
revised 11/ 9/99;
accepted 11/15/99.
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