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Clinical Cancer Research Vol. 6, 3177-3182, August 2000
© 2000 American Association for Cancer Research


Molecular Oncology, Markers, Clinical Correlates

EMS1 Gene Amplification Correlates with Poor Prognosis in Squamous Cell Carcinomas of the Head and Neck1

Juan P. Rodrigo2, Luis A. García, Sofía Ramos, Pedro S. Lazo and Carlos Suárez

Departments of Otolaryngology-Head and Neck Surgery [J. P. R., L. A. G., C. S.] and Molecular Biology [S. R., P. S. L.], Hospital Central de Asturias, University of Oviedo, Instituto Universitario de Oncología, 33006 Oviedo, Spain


    ABSTRACT
 Top
 ABSTRACT
 INTRODUCTION
 MATERIALS AND METHODS
 RESULTS
 DISCUSSION
 REFERENCES
 
The relationship between CCND1 and/or EMS1 amplification and disease outcome was studied in a prospective series of 104 head and neck squamous cell carcinomas treated by surgical resection. The CCND1 and EMS1 copy number in tumor samples was estimated by differential PCR. The presence or absence of amplification was analyzed in relation to clinicopathological variables, tumor recurrence, and patient survival. CCND1 amplification occurred in 32 cases (31%) and was associated with increased lymph node stage (P = 0.005) and advanced disease stage (P = 0.003). EMS1 amplification was identified in 21 cases (20%) and was related with advanced T stages (P = 0.001), increased lymph node stage (P = 0.02), advanced disease stage (P = 0.041), poor histological differentiation (P = 0.018), recurrent disease (P = 0.0004), and reduced disease-specific survival (P < 0.0001). Coamplification of both genes occurred in 11 cases (11.5%). Multivariate analysis confirmed that in addition to regional lymph node status, EMS1 amplification is an independent predictor of death from the tumor (P = 0.0027). CCND1 amplification was not prognostic. These data indicate that EMS1 amplification, but not CCND1 amplification, predicts early recurrence and reduced survival in squamous cell carcinoma of the head and neck. The prognostic significance previously attributed to CCND1 amplification may be attributable to its frequent coamplification with EMS1.


    INTRODUCTION
 Top
 ABSTRACT
 INTRODUCTION
 MATERIALS AND METHODS
 RESULTS
 DISCUSSION
 REFERENCES
 
The survival rate for patients with SCCHN3 (1) has remained unchanged in recent years despite the advances in diagnosis and treatment. Our ability to prognosticate for advanced cases of SCCHN is particularly poor owing to variations in the biological behavior of the tumors and inadequacies of the present staging system. It is therefore essential to identify new markers (e.g., genetic markers) that may distinguish differences in tumor behavior.

Multiple genes and chromosomal regions are implicated in SCCHN tumorigenesis. Amplification of chromosomal region 11q13 is one of the genetic alterations most frequently observed in SCCHN (1, 2, 3, 4, 5, 6, 7) . The amplified 11q13 region is estimated to be 3–5 megabases in size and includes four putative oncogenes: CCND1 (PRAD1), FGF3 (INT2), FGF4 (HST1), and EMS1. CCND1 and EMS1 are the more prominent candidate oncogenes because they were found to be also overexpressed in all carcinomas with an 11q13 amplification (8) . Therefore, the activation of these genes might confer the selective advantage to these tumors. The CCND1 gene encodes the cell cycle regulating cyclin D1 protein involved in the G1-to-S transition. EMS1 encodes a cytoskeletal protein homologous to the avian F actin-binding protein (cortactin), which is thought to be involved in cell-to-cell interactions (8) .

Amplification of the chromosome 11q13 region in SCCHN has been correlated with aggressive tumor growth (3 , 9) , the presence of lymph node metastases (7 , 10, 11, 12) , and poor prognosis (9) . In addition, various studies have assessed the clinical and prognostic significance of CCND1 amplification and/or overexpression, showing an association with recurrence and shortened overall survival (6 , 13, 14, 15, 16, 17) . However, little is known about the prognostic significance of EMS1 amplification in SCCHN. Because EMS1 amplification in tumors results in overexpression of cortactin and this is accompanied by a partial redistribution of cortactin from the cytoplasm into cell-matrix contact sites, it has been suggested that EMS1 amplification can contribute to the invasive potential of tumor cells (8 , 18) .

We hypothesized that, although both CCND1 and EMS1 contribute to the growth advantage of SCCHN with 11q13 amplification, amplification of each gene individually may confer different properties to these tumors. The purpose of this study was therefore to assess the correlation between CCND1 and/or EMS1 amplification, the clinicopathological characteristics, and tumor behavior in SCCHN.

To evaluate CCND1 and EMS1 amplifications, we have used differential PCR, which is a rapid, simple, and sensitive method to determine semiquantitatively the number of gene copies. It only requires small amounts of DNA, which facilitates these studies in clinical medicine.


    MATERIALS AND METHODS
 Top
 ABSTRACT
 INTRODUCTION
 MATERIALS AND METHODS
 RESULTS
 DISCUSSION
 REFERENCES
 
Tumor Specimens.
Tissue samples of 104 consecutive primary SCCHN were obtained from patients undergoing surgical resection of their tumor between January 1992 and July 1994. All patients included in our study had a single primary tumor, none had undergone treatment before surgery, and had microscopically clear surgical margins. None of the patients were thought to have had distant metastases at the time of surgery. All but one subject were smokers, and 94 of them were also habitual alcohol drinkers. The exceptionally low proportion of women in the sample (only one) is usual for this kind of tumor in our media. A total of 56 patients received postoperative radiotherapy. As a general rule, this was administered to the patients with histologically N2 or N3 neck lesions, and also to the patients with N0-N1 neck lesions with locally advanced stage (T4). The clinicopathological data from the patients are shown in Table 1Citation . The stage of disease was determined after the surgical resection of the tumor (with lymph node dissection where appropriate) according to the TNM system of the Union Internationale Contre le Cancer (Ed. 4).


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Table 1 Characteristics of the patient population and their tumors

 
DNA Isolation and PCR Analysis.
Tissue specimens were frozen immediately in liquid nitrogen and stored at -70°C until DNA extraction. High-molecular-weight DNA was isolated by standard phenol-chloroform extraction as previously described (19) .

The PCR mixtures contained 0.2–0.5 µg of target DNA, 10 mM Tris-HCl (pH 8.3), 1.5 mM MgCl2, 50 mM KCl, 0.2 mM each of deoxynucleotide triphosphate, 1 µM of each primer, and 1 unit of Taq polymerase (Boehringer Mannheim, Mannheim, Germany) in a total volume of 50 µl with a 50-µl mineral oil overlay. The PCR cycles included 1 min at each temperature (94°C, 56°C, and 72°C), for a total of 30 cycles, and a final cycle at 72°C for 7 min. Two different sets of primers, one for the target gene (CCND1or EMS1) and the other for the control gene, were present simultaneously in the reaction vessel, as previously described (20 , 21) . The TH gene, which is located on the same chromosome as the target genes, was used as the control gene. Primer sequences were designed from the genomic sequences (obtained from GenBank).4 Primers for the CCND1 gene were 5'-CGTACCCCG-ATGCCAACC and 5'-ATGGACGGCAGGACCTCC, and they amplified a fragment of 121bp. Primers for the EMS1 gene were 5'-TCCCCTGATGCCCAGGTC and 5'-TCC-CAATCCAGAGACCCG, and they amplified a sequence of 111 bp. Primers for the TH gene were 5'-GCCCCAGCTGCATCCTAC and 5'-CTTGGCAGACACCTGGGG, and they amplified a sequence of 188 bp. The primers were purchased from MWG-Biotech (Mannheim, Germany).

Samples of DNA from normal tissues (tonsils) obtained from noncancer patients were used as negative controls. As positive controls, a mixture of DNA from normal tissue and increasing amounts of a previously PCR-amplified sequence of the target gene (CCND1 or EMS1), mimicking different degrees of amplification, was used as template in the PCR reaction, as previously described (19) .

Electrophoresis and Quantitation of PCR Products.
After PCR, 10 µl of each sample were electrophoresed on gels containing 3% NuSieve agarose (FMC, Rockland, ME) and 1% molecular biology grade agarose (Promega, Madison, WI) for 1.5 h at 65 V in 40 mM Tris-Acetate and 2 mM EDTA buffer. The gels were stained with ethidium bromide, and the images of the UV-illuminated gels were captured using a digital camera and stored in an IBM-compatible PC system. The bands were thereafter quantitated by computerized densitometric analysis techniques (Kodak Digital Science 10, Eastman Software, Billerica, MA), and the CCND1 or EMS1:TH ratios were determined. The results of densitometry were corroborated by visual inspection of the gels.

Statistical Analysis.
Statistical analysis was performed using {chi}2, with Yates’ correction where appropriate, and Fisher’s exact tests. Survival curves were calculated using the Kaplan-Meier product limit estimate (22) . Deaths from causes other than the index tumor or its metastases were not considered treatment failures, and these patients were censored in all analysis involving the length of survival. Differences between survival times were analyzed by the log-rank method (23) . Multivariate Cox proportional hazards models (24) were used to examine the relative impact of either variables demonstrated to be statistically significant in univariate analysis or those variables likely to have an effect on outcome (e.g., tumor site and histopathological grade). In these models, tumor sites were dichotomized as oral cavity and pharynx versus larynx. Similarly, T-stage classification was dichotomized as T1, T2, or T3 versus T4. Lymph node metastasis classification was dichotomized as N0 or N1 versus N2 or N3. Stage was dichotomized as stage I, stage II, or stage III versus stage IV. Finally, histopathological grade was dichotomized as well- and moderately differentiated versus poorly differentiated. Ps <= 0.05 were considered to be statistically significant. Patients were observed for at least 36 months.


    RESULTS
 Top
 ABSTRACT
 INTRODUCTION
 MATERIALS AND METHODS
 RESULTS
 DISCUSSION
 REFERENCES
 
Differential PCR.
A total of 104 samples from patients with SCCHN were studied. Each sample was investigated for CCND1 and EMS1 amplifications by differential PCR using the gene for TH as the control. Samples of DNA obtained from normal tissues showed CCND1:TH ratios of 1.2 ± 0.21 (mean ± SD) and EMS1:TH ratios of 0.9 ± 0.1 (mean ± SDs obtained from 10 different samples). The positive controls showed that there was an increase in the PCR product from the target gene, compared with the PCR product from the control gene, as the target gene copy number used as the template was increased (data not shown). Experimentally, gene amplification was defined as at least a 2-fold increase in the CCND1:TH or EMS1:TH ratios, relative to the ratios obtained with normal tissue DNA. Because of the semiquantitative nature of the differential PCR, the ratios obtained were not converted to a score of amplification; the results were expressed as amplification or no amplification of the CCND1 or EMS1 genes. PCR was carried out at least twice in the positive cases.

CCND1 and EMS1 amplifications were found in 32 (31%) and 21 (20%) of the 104 tumor samples, respectively. Coamplification of both genes was demonstrated in 11 cases (11.5%). None of the cases considered nonamplified presented a CCND1:TH ratio higher than 1.9 (mean ± SD, 1.3 ± 0.2), or an EMS1:TH ratio higher than 1.8 (mean ± SD, 1.2 ± 0.2). Fig. 1Citation shows the results of the differential PCR in some of the amplified cases.



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Fig. 1. Differential PCR analysis of CCND1 (A) and EMS1 (B) gene amplifications from various tumor samples in which gene amplification was found. The PCR products were separated by agarose gel electrophoresis and quantified by image analysis densitometry. N, controls with normal tissue DNA; C+, the positive controls (2-fold amplification); C-, the negative controls.

 
Association of Amplification of CCND1 or EMS1 with Clinicopathological Parameters.
Table 2Citation presents the correlation of CCND1 and EMS1 amplifications with clinical stage, pathological grading, primary site, relapse, and disease outcome. Amplified cases were found at each primary head and neck anatomical site, with no statistically significant differences. However, in the cases with CCND1 amplification, there was a tendency toward higher frequency of amplification in those cases with hypopharyngeal localization. Sixteen (76%) of the 21 cases with EMS1 amplification were observed in T4-stage tumors, with the association being statistically significant (P = 0.001). CCND1 amplification was also more frequent in T4-stage tumors, although in this case, the differences were not statistically significant (P = 0.12). Both CCND1 and EMS1 amplifications were associated with increased regional lymph node disease (Table 2)Citation . Because CCND1 and EMS1 amplifications correlate with advanced T and N stages, none of the patients with either stage I or II disease had CCND1 or EMS1 amplification, resulting in a statistically significant association between advanced disease stage and amplification of these genes. No relationship was observed between CCND1 amplification and histopathological differentiation. However, EMS1 amplification was significantly associated with poorly differentiated tumors (P = 0.018).


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Table 2 CCND1 and EMS1 amplification by clinicopathological findings, site and relapse

 
Amplification of CCND1 and/or EMS1 and Disease Course.
Seventeen patients that died from causes not related to the index tumor were excluded from the recurrence analysis (four of them had CCND1 amplification, and three had EMS1 amplification). Of the remaining 28 CCND1-amplified cases, 21 (75%) had tumor recurrence (local/regional recurrence or distant metastases), compared with 35 (57%) in the nonamplified group, that did not reach statistical significance (Table 2)Citation . The differences in recurrence rates were statistically significant when the cases with and without EMS1 amplification were compared (Table 2)Citation : 18 (100%) of the 18 EMS1-amplified cases versus 37 (54%) of the 69 nonamplified cases presented recurrence. Then, it seems that EMS1 amplification has a stronger relationship with tumor recurrence than CCND1 amplification. It is confirmed if we compare the recurrence rates when the coamplified cases are considered separately (Table 3)Citation ; in this fashion, recurrences were found in 10 (59%) of 17 cases with CCND1 amplification, 7 (100%) of 7 cases with EMS1 amplification, 11 (100%) of 11 coamplified cases, and 27 (52%) of 52 nonamplified cases.


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Table 3 Gene amplification and relapse in 87 patients with SCCHN with adequate follow-up

 
The results of univariate Kaplan-Meier analyses are shown in Fig. 2Citation . The analyses demonstrated that EMS1 amplification had a statistically significant association with shorter disease-specific survival (log-rank P < 0.0001) in this patient population. The data in Fig. 2Citation also suggest that there was an association, although not statistically significant (log-rank P = 0.073), of CCND1 amplification with disease course. This is likely to be the result of its frequent coamplification with EMS1. Other parameters that had statistically significant association with a reduced disease-specific survival were: tumor size T4 (log-rank P = 0.047), locoregional lymph node metastases of class N2 or greater (log-rank P = 0.0002), stage IV disease (log-rank P = 0.0018), and pharyngeal localization of the tumor (log-rank P = 0.031). The influence of postoperative radiotherapy on survival cannot be addressed because it was administered mainly to the patients in stage IV disease (46 of 56 patients that received this treatment). Because CCND1 and EMS1 amplifications were associated with advanced disease stage, most of the amplified cases received this treatment (25 of 32 with CCND1 amplification and 17 of 21 with EMS1 amplification). Then, it seems unlikely that this can influence the differences in survival between the amplified and the nonamplified cases.



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Fig. 2. Kaplan-Meier disease-free survival curves of the patients with (----) and without () CCND1 (A) or EMS1 (B) gene amplification. Differences between survival times were analyzed by the log-rank method.

 
The results of the multivariate Cox proportional hazards model showed two parameters that were statistically significant independent predictors of a reduced disease-specific survival (Table 4)Citation : cervical lymph node metastases of class N2 or greater and EMS1 amplification. Amplification of the EMS1 gene appeared to confer an adjusted relative risk of 2.58 for dying of the index cancer (95% confidence interval, 1.3–8.99). Amplification of the CCND1 gene did not enter in either of the multivariate Cox models.


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Table 4 Forward stepwise Cox analysis of disease-specific survival in 104 patients with squamous cell carcinoma of the head and neck

 

    DISCUSSION
 Top
 ABSTRACT
 INTRODUCTION
 MATERIALS AND METHODS
 RESULTS
 DISCUSSION
 REFERENCES
 
Amplification of the chromosome 11q13 region has been observed in a variety of human malignancies. The highest frequencies of amplification have been found in adenocarcinomas of the breast and in squamous cell carcinomas of the esophagus and the head and neck region (8) . Although various genes are consistently present on the amplified 11q13 region, only CCND1 and EMS1 are likely to be the key genes within this region because in addition to being frequently coamplified, they were found to be overexpressed in all tumors with an 11q13 amplification (8) . CCND1 encodes the cyclin D1, a G1 cyclin involved in the G1-to-S transition that functions as a positive cell cycle regulator (25) . The EMS1 gene encodes cortactin, a cytoskeletal protein involved in regulating the interactions between components in the adherens junctions, and as such, its overexpression might affect the organization and functioning of cytoskeleton and cell-adhesion structures and hence, contribute to the invasive behavior of tumor cells (18 , 26) .

In SCCHN, amplification of 11q13 has been reported in 20–52% of patients (1, 2, 3 , 5 , 7 , 9, 10, 11) , which compares well with 34% in the present study. Several works have focused on CCND1 amplification and showed similar results (4 , 6 , 13 , 17) . In contrast, only a few studies have also analyzed EMS1 amplification (3 , 8 , 9 , 12) . In these series, as in our study, CCND1 and EMS1 have not been uniformly amplified in all cases. These differences in amplification of 11q13 markers were also described in breast carcinomas (27) , and they are in agreement with the structure of the 11q13 amplicon proposed by Schuuring (8) : the amplified 11q13 region harbors at least three, or even more, separate cores of amplification. The first core extends from BCL1 to FGF4, with the CCND1 gene as the best candidate key gene. The second core extends from FGF3 to the EMS1 gene, with the EMS1 gene as the best candidate key gene. Another two cores of amplification have been described in the centromeric and the telomeric borders, respectively, of the 11q13 region; as yet, no gene has been identified in these subregions.

The results of the present study indicate that the amplification of EMS1 is of prognostic value for SCCHN independent of other known risk factors. In fact, all of the patients with EMS1 amplification experienced disease recurrence. In contrast, CCND1 amplification has not found to be of prognostic significance in multivariate analysis. In other reports, 11q13 amplification (without reference to specific genes) was observed in patients with advanced disease, a poorly differentiated histology of the tumor, and deeply invasive growth (3) . In concordance with the presumed association with progressed disease, the amplified cases develop more frequent recurrences and have an increased risk of tumor-associated death (6 , 7 , 9) . Opposite reports (5 , 11) indicate the controversy on this point. This may be attributable to the use of different 11q13 markers, measuring only one of the amplification cores to analyze 11q13 amplification. On the other hand, the amplification and/or overexpression of CCND1 has been reported to be a poor prognostic sign in various studies focused on this gene (6 , 13, 14, 15, 16, 17) . Again, there are also reports on the contrary (4 , 28) . In addition, the association of CCND1 amplification and/or overexpression and poor prognosis is not absolute, suggesting that amplification and/or overexpression of CCND1 contributes only partially to the process of tumor progression. Our findings indicate that the amplification of CCND1 loses its prognostic significance when the cases in which CCND1 is coamplified with the EMS1 gene are eliminated. Thus, the prognostic significance attributed to the CCND1 amplification may be attributable to its frequent coamplification with the EMS1 gene. This agrees with the proposed role of these genes in tumor development (8) : CCND1 overexpression might confer to the tumor cells the ability to proliferate under reduced growth factor conditions because of its effects in the G1-to-S transition of the cell cycle; EMS1 overexpression might mediate the increased invasive and metastatic behavior of tumor cells attributable to its effects in the organization and the functioning of cytoskeleton and cell adhesion structures.

Differential PCR has previously been shown as a simple, rapid, and sensitive method to detect genetic amplification (17 , 19, 20, 21) . Our results corroborate that of others, showing that this method is suitable to detect gene amplification. It is reproducible, and its main advantage is that small quantities of DNA are needed, making possible its clinical use with samples obtained from small biopsies or fine needle aspirations. Using this technique, we have found an 11q13 amplification rate in agreement with previous studies that used conventional techniques.

We conclude that amplification of the EMS1 gene is an independent prognostic marker for survival, and it specifies a subgroup of operable SCCHN patients that is at increased risk and might benefit from more intensive treatment and follow-up. Whether this is the result of greater tumor aggressiveness or of decreased responsiveness to adjuvant radiotherapy remains to be elucidated. Presently, clinical and histopathological parameters are used as guides for the application of adjunctive therapy, such as radiotherapy or even resection of the surgical field. Our data suggest that EMS1 amplification can augment the predictive power of those clinical and histopathological markers. Routine implementation of this molecular test will require confirmation of our findings in larger prospective studies.


    ACKNOWLEDGMENTS
 
We thank Dr. Enrique F. Bustillo for assistance with statistical analysis.


    FOOTNOTES
 
The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked advertisement in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.

1 Supported by Grant 97/1092 from the Fondo de Investigaciones Sanitarias, Spain. Back

2 To whom requests for reprints should be addressed, at Servicio de Otorrinolaringología, Hospital Central de Asturias, 33006 Oviedo, Spain. Phone: 34-985112109; E-mail: jrodrigot{at}seorl.org Back

3 The abbreviations used are: SCCHN, squamous cell carcinoma of the head and neck; TH, tyrosine hydroxylase. Back

4 Internet address: http://www.ncbi.nlm.nih.gov. Back

Received 1/24/00; revised 5/ 3/00; accepted 5/ 3/00.


    REFERENCES
 Top
 ABSTRACT
 INTRODUCTION
 MATERIALS AND METHODS
 RESULTS
 DISCUSSION
 REFERENCES
 

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