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Clinical Cancer Research Vol. 6, 3434-3441, September 2000
© 2000 American Association for Cancer Research


Advances in Brief

Compensatory Stabilization of RIIß Protein, Cell Cycle Deregulation, and Growth Arrest in Colon and Prostate Carcinoma Cells by Antisense-directed Down-Regulation of Protein Kinase A RI{alpha} Protein

Maria Nesterova, Kohei Noguchi, Yun Gyu Park, Youl Nam Lee and Yoon S. Cho-Chung1

Cellular Biochemistry Section, Laboratory of Tumor Immunology and Biology, National Cancer Institute, NIH, Bethesda, Maryland 20892-1750


    ABSTRACT
 Top
 ABSTRACT
 Introduction
 Materials and Methods
 Results
 Discussion
 REFERENCES
 
The cyclic AMP-dependent protein kinase (PKA) exists in two isoforms, PKA-I (type I) and PKA-II (type II), that contain an identical catalytic (C) subunit but distinct regulatory (R) subunits, RI and RII, respectively. Increased expression of RI{alpha}/PKA-I has been shown in human cancer cell lines, in primary tumors, in cells after transformation, and in cells upon stimulation of growth. We have shown previously that a single-injection RI{alpha} antisense treatment results in a reduction in RI{alpha} and PKA-I expression and sustained inhibition of human colon carcinoma growth in athymic mice (M. Nesterova and Y. S. Cho-Chung, Nat. Med., 1: 528–533, 1995). Growth inhibition accompanied reduction in RI{alpha}/PKA-I expression and compensatory increases in RIIß protein and PKA-IIß, the RIIß-containing holoenzyme. Here, we report that these in vivo findings are consistent with observations made in cancer cells in culture. We demonstrate that the antisense depletion of RI{alpha} in cancer cells results in increased RIIß protein without increasing the rate of RIIß synthesis or RIIß mRNA levels. Pulse-chase experiments revealed a 3–6-fold increase in the half-life of RIIß protein in antisense-treated colon and prostate carcinoma cells with little or no change in the half-lives of RI{alpha}, RII{alpha}, and C{alpha} proteins. Compensation by RIIß stabilization may represent a novel biochemical adaptation mechanism of the cell in response to sequence-specific loss of RI{alpha} expression, which leads to sustained down-regulation of PKA-I activity and inhibition of tumor growth.


    Introduction
 Top
 ABSTRACT
 Introduction
 Materials and Methods
 Results
 Discussion
 REFERENCES
 
Varying the ratio of two isoforms of cAMP2 receptor protein, the PKAs type I (PKA-I) and type II (PKA-II), which are distinguished by different regulatory subunits, RI and RII, have been linked to cell growth and differentiation (1 , 2) . An enhanced expression of RI/PKA-I correlates with active cell growth and cell transformation, whereas a decrease in RI/PKA-I and an increase in RII/PKA-II are related to growth inhibition and differentiation-maturation (1 , 2) .

RI is the major R subunit of PKA detected in a variety of human cancer cell lines (2) . The majority of primary human breast and colon carcinomas examined show an enhanced expression of RI and a higher ratio of PKA-I:PKA-II compared with normal counterparts (3, 4, 5, 6) . Importantly, the relative overexpression of the RI{alpha} subunit of PKA was associated with poor prognosis in patients with breast cancer (5) . Quantitative PCR analysis of ovarian tumor tissue samples revealed that RI{alpha} mRNA expression is elevated in serous tumors, compared with mucinous, endometroid, or clear cell tumors (7) . The levels of RI{alpha} mRNA were elevated in ovarian cancer cells, which are highly tumorigenic, whereas RI{alpha} mRNA was expressed at lower levels in the nontumorigenic ovarian cancer cell lines and minimally expressed in the placental mRNA control (7) .

We have demonstrated previously that a single-injection treatment with RI{alpha} antisense results in the suppression of RI{alpha} and PKA-I that precedes tumor growth inhibition (8) . Growth inhibition persisted, even after RI{alpha} suppression ceased, as long as PKA-I down-regulation was present. The PKA-I down-regulation was accompanied by a compensatory increase in the level of RIIß protein and PKA-IIß (RIIß-containing PKA-II) holoenzyme (8) .

In this report, we demonstrate, using cultured cancer cells, that the loss of RI{alpha} by antisense treatment results in biochemical compensation by RIIß and that this compensation is attributable to an increase in the half-life of RIIß protein without changes in the rate of RIIß protein synthesis or RIIß mRNA levels.


    Materials and Methods
 Top
 ABSTRACT
 Introduction
 Materials and Methods
 Results
 Discussion
 REFERENCES
 
Materials.
8-N3-[32P]cAMP (60 Ci/mmol; 1 Ci, 37 GBq) was obtained from ICN Pharmaceuticals. Pepstatin, antipain, chymostatin, leupeptin, aprotinin, and soybean trypsin inhibitor were from Sigma Chemical Co. Protein A-Sepharose CL-4B was purchased from Pharmacia-LKB. Polyclonal anti-RI{alpha}, anti-RII{alpha}, and anti-RIIß antibody was kindly provided by Professor Sang Dai Park (Seoul National University, Seoul, Korea).

Oligonucleotides.
The oligonucleotides used in the present study include the phosphorothioate oligodeoxynucleotide antisense targeted toward human RI{alpha} (the NH2-terminal codons 8–13, 18 mer; PS-DNA antisense RI{alpha}; Ref. 8 ), and the second-generation PS-DNA-antisense RI{alpha} of either the RNA-DNA hybrid (HYB0165) or the methylphosphonate (P-ME DNA; HYB0190). HYB0165, 5'-[GCGU]GCCTCCTCAC[UGGC]-3', is a PS-DNA-antisense RI{alpha} containing segments of four 2'-O-methyl-oligoribonucleosides (RNA) at both the 5' and 3' ends (bracketed). HYB0190, 5'-GCGTGCCTCCTCACTGGC-3', contains six methylphosphonate oligodeoxynucleotides (underlined) at the center of the PS-DNA-antisense RI{alpha}. The control oligonucleotides for HYB0165 are HYB0295, 5'-[GCAU]GCTTCCACAC[AGGC]-3', a 4-base mismatched (underlined) form of HYB0165, and HYB0674, 5'[NNNN]NNNNNNN[NNNN]-3', a random sequence oligonucleotide, with the bracketed segments representing 2'-O-methyl-RNA, and N = A, T, C, or G. All internucleotide linkages are phosphorothioate. As a control for HYB0190, we used HYB0191, 5'-GCGCGCCTCCTCGCTGGC-3', a two-base mismatched control DNA (two mismatches in bold). These oligonucleotides were kindly provided by Dr. Sudhir Agrawal (Hybridon, Inc.).

Tumor Growth and Antisense Treatment.
HCT-15 (MDR) human colon carcinoma cells were kindly provided by Dr. Dick Camelia, National Cancer Institute. Tumor cells (2 x 106 cells) were inoculated s.c. into the left flank of athymic mice. The RI{alpha} antisense PSODN (8) or MBOs of RNA-DNA hybrid HYB0165 and 4-base mismatched and random sequence control oligos were used. RI{alpha} antisense or control oligos at daily dose (0.1 mg/0.1 ml saline/mouse, daily, five times/week), or saline (0.1 ml/mouse) was injected i.p. into mice when tumor size reached 30–50 mg, 7–10 days after cell inoculation. Tumor volumes were obtained from daily measurement of the longest and shortest diameters and calculation by the formula:

where

At indicated times, animals were sacrificed. Tumors were removed and immediately frozen in liquid N2 and stored at -80°C until used.

Photoaffinity Labeling Followed by Immunoprecipitation of R Subunits.
Tumors were homogenized with a Teflon/glass homogenizer in ice-cold buffer 10 (Ref. 8 ; 20 mM Tris-HCl (pH 7.4), 100 mM NaCl, 1% NP40, 0.5% sodium deoxycholate, 5 mM MgCl2, 0.1 mM pepstatin, 0.1 mM antipain, 0.1 mM chymostatin, 0.2 mM leupeptin, 0.4 µg/ml aprotinin, and 0.5 µg/ml soybean trypsin inhibitor filtered through a 0.45-µm-pore membrane) and centrifuged for 5 min in an Eppendorf microcentrifuge at 4°C. The supernatants were used as tumor extracts. The content of R subunits of PKA in tumors was determined by photoaffinity labeling with 8-N3-[32P] cAMP, followed by immunoprecipitation with anti-R antibodies as described previously (8) .

Cell Cultures.
LS-174T human colon carcinoma cells (a gift from John W. Greiner, National Cancer Institute, Bethesda, MD) were grown in Eagle’s MEM supplemented with 10% heat-inactivated fetal bovine serum, 0.2 mM Eagle’s MEM nonessential amino acids (Life Technologies, Inc., Gaithersburg, MD), 20 mM HEPES (pH 7.4), 2 mM glutamine (ICN Biomedicals), and antibiotic-antimycotic. LNCaP human prostate carcinoma cells (a gift from C. A. Stein, Columbia University, New York, NY) were grown in RPMI 1640 (Life Technologies, Inc.) supplemented with 1% heat-inactivated fetal bovine serum, 0.1 mM MEM nonessential amino acids (pH 7.4), and 1% antibiotic-antimycotic. Cells were grown in a humidified atmosphere of 95% air and 5% CO2 at 37°C.

Cell Cycle Analysis of LS-174T Cells.
Fixed cells were treated with 1 mg/ml RNase (Sigma Chemical Co., St. Louis, MO) for 30 min and stained with 10 µg/ml propidium iodide (Sigma) for flow cytometry (FACScan, Becton Dickinson, San Jose, CA). The data were analyzed with the Modifit software (Becton Dickinson). Over 90% of confluent cells were accumulated at G0-G1 phase.

Monolayer Growth.
For cell growth experiments, 105 cells were plated in 35-mm dishes (Corning Glass). At the indicated time points, the cells were trypsinized and counted using a ZI Coulter Counter (Coulter Electronics).

Oligonucleotide Treatment.
To increase the delivery of oligonucleotide into cells in culture, cationic lipid DOTAP (Boehringer Mannheim) was used in the oligonucleotide treatment. One day after seeding, the RI{alpha} antisense and control oligonucleotides were added to the wells at indicated concentrations in the presence of DOTAP. After 1 day of incubation, the medium was removed, fresh medium was added in the absence of oligonucleotide and DOTAP, and cells were harvested at the indicated time points. Cells were also treated with DOTAP alone, and no cytotoxicity was observed under the experimental conditions used.

Preparation of Cell Extracts.
All procedures were performed at 0–4°C. After harvesting by scraping and centrifugation, cell pellets were washed once in NaCl/Pi (0.0017 M KH2PO4, 0.005 M Na2HPO4, and 0.15 M NaCl, pH 7.4). The final cell pellets were suspended in 500 µl of buffer 10 (8) supplemented with 0.5 mM phenylmethylsulfonyl fluoride and 1 mM benzamidine, passed through a 20-gauge needle five times using a 1-ml syringe, allowed to stand at 4°C for 15 min, and then centrifuged for 5 min in an Eppendorf microcentrifuge at 4°C. The supernatants were used as lysates. Protein concentration (usually 1–5 mg/ml) was determined according to Lowry et al. (9) using BSA as a standard.

Western Blot Analysis.
Cell extracts were prepared (see above), and total protein (40 µg) was run on 12% SDS-polyacrylamide gels and then transferred to nitrocellulose membranes. Blots were blocked overnight and probed with affinity purified polyclonal antibodies against RI{alpha}, and RIIß. Blots were then washed and incubated with horseradish peroxidase-conjugated secondary antibodies and visualized using the Amersham enhanced chemiluminescence ECL system.

RNA Preparation and Northern Blot Analysis.
Total cellular RNA preparation, Northern blot analysis, and hybridization of RNA with 32P-labeled human RI{alpha} probes were described previously (10) . DNA was labeled with [{alpha}-32P]dCTP according to a standard protocol for nick translation reactions using an Amersham nick translation kit. The specific radioactivity of labeled DNA equaled 3.7 x 106 cpm/µg DNA.

Solution Hybridization.
Total mRNA was incubated with a [32P]CTP-labeled DNA probe for 16 h at 43°C. After hybridization, samples were digested with DNase (Sigma), precipitated in 10% trichloroacetic acid, and filtered onto Whatman CF/C filters. The amounts of DNase-resistant probe were determined by liquid scintillation counting.

Translation Rate Determination.
Translation rate determination was performed according to Amieux et al. (11) , with slight modifications. Both untreated cells and cells treated with RI{alpha} antisense or control oligonucleotide (0.5 µM; 4 days) were washed twice in PBS [20 mM NaPO4 (pH 7.0), 150 mM NaCl] and preincubated for 1 h in labeling medium (L-methionine + L-cysteine-free DMEM (Biofluids) with 10% heat-inactivated fetal bovine serum and antibiotic-antimycotic) and then incubated for 1 h at 37°C with 100 µCi/ml[35S]L-methionine + L-cysteine protein labeling mix (Trans 35S-Label; ICN). After labeling, cells were harvested by washing four times in cold PBS, followed by addition of lysis buffer (buffer 10; Ref. 8 ; see "Preparation of Cell Extracts"). Plates were scraped, and the cells were transferred to Eppendorf tubes and centrifuged. Supernatants were used as lysates. To determine 35S-incorporation into total protein, 2 µl from each sample were spotted onto Whatman GF/C filters, and proteins were precipitated in 10% trichloroacetic acid, followed by three washes in 3% trichloroacetic acid/1% sodium PPi. Filters were then dried and counted in liquid scintillation fluid. Samples containing equivalent total radioactivity were brought to a final volume of 100 µl in lysis buffer (buffer 10, see above) containing 100 mM NaCl and 40 µM cAMP and incubated for 2.5 h with affinity-purified polyclonal anti-RI{alpha} or anti-RIIß antibodies, followed by 30 min with 3 µl of a 10% suspension of protein A-Sepharose. Reactions were centrifuged to pellet the immunoprecipitates, which were stored at -70°C. Pellets were resuspended, solubilized, and centrifuged, and the supernatants were run on 10% SDS-PAGE. Gels were fixed for 30 min in 10% methanol and 5% acetic acid, followed by a 30-min incubation in Amplify. Gels were then dried and exposed to XAR Kodak film for 24 h.

Pulse-Chase Experiments.
After labeling the control and RI{alpha} antisense treated cells for 1 h with 100 µCi/ml [35S]L-methionine + L-cysteine protein-labeling mix, duplicate 10-cm plates were washed twice in DMEM containing 10% heat-inactivated fetal bovine serum and then incubated in the growth medium (see "Cell Culture") containing 4 mM L-methionine + L-cysteine. At each time point, the cells were harvested and processed as described above. For the immunoprecipitation reactions, equivalent amounts of total protein were used rather than equivalent counts.


    Results
 Top
 ABSTRACT
 Introduction
 Materials and Methods
 Results
 Discussion
 REFERENCES
 
MBO Antisense RI{alpha}.
In the present study, we used a mixed-backbone antisense RI{alpha}, i.e., the second-generation PS-DNA antisense RI{alpha} of either an RNA-DNA hybrid (HYB0165) or a methylphosphonate DNA (P-ME DNA, HYB0190; see "Materials and Methods"). These oligonucleotides possess the favorable antisense properties of PS-oligo DNA (RNase H activation) and of RNA-DNA hybrid and P-ME DNA (increase in nuclease resistance and duplex stability). Such MBO antisense has been shown to have improved antisense activity over PS-oligonucleotides (12 , 13) . As a control, we used a 4-base mismatched oligonucleotide (HYB0295), a random sequence oligonucleotide (HYB0674), and a 2-base mismatched P-ME oligo (HYB0191; see "Materials and Methods"). To facilitate oligonucleotide delivery to the cell, cationic lipid DOTAP was used in the oligonucleotide treatment of cells (See "Materials and Methods"). Cells treated with DOTAP alone exhibited no cytotoxicity under all experimental conditions.

Inhibition of MDR Tumor Growth.
An enhanced expression of RI{alpha} has been observed in MDR cancer cell lines from a variety of cell types compared with non-MDR parental cell lines (14) . We examined the effects of RI{alpha} antisense on MDR tumor growth. Studies of the pharmacokinetics of the PS-oligonucleotide indicate that a PS-oligo has a half-life of ~40–50 h in plasma (15) , which suggests that it may be given either daily or every other day. We therefore examined the effects of daily RI{alpha} antisense treatment on in vivo growth of HCT-15 MDR human colon carcinoma.

RNA-DNA hybrid antisense (HYB0165), at a dose of 0.1 mg/mouse, i.p. daily, five times/week for 14 days, inhibited growth by 70%, but PS-oligo antisense at the same dose schedule promoted 50% growth inhibition (Fig. 1A)Citation . Thus, the MBO antisense showed a greater potency of growth inhibition than the parental PS-oligo antisense. The four mismatched control oligos had no effect on tumor growth (Fig. 1A)Citation .



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Fig. 1. Inhibition of MDR tumor growth in vivo by daily injection antisense treatment. A, inhibition of tumor growth. Growth of HCT-15 (MDR) tumor in nude mice and antisense treatment (daily treatment) followed the method described in "Materials and Methods." Data represent means of 5–10 tumors from two separate experiments excluding ulcerated tumors; bars, SD. At 14 days of treatment, animals were sacrificed (if tumors reached 2.0 cm in longest diameter, animals were killed before day 14), and tumors were removed, immediately frozen in liquid N2, and kept frozen at -80°C until used. The tumor extracts were prepared as described previously (8) . B, R subunit levels in tumors. The content of R subunits of protein kinase A in tumors was determined by photoaffinity labeling with 8-N3-[32P]cAMP, followed by immunoprecipitation with anti-R antibodies as described previously (8) . Data represent one of two separate experiments that gave similar results. 2'OMe, RNA-DNA hybrid antisense RI{alpha} (HYB0165); 2'-OMeC, control oligo (HYB0295); PS, PS-DNA antisense RI{alpha} (HYB0164); PSC, control oligo (HYB0167).

 
The potency of antisense oligonucleotides in growth inhibition paralleled their efficacy in down-regulating RI{alpha} protein levels in tumors. The RNA-DNA hybrid antisense, which inhibited growth severely, almost completely inhibited RI{alpha} expression in tumors (Fig. 1BCitation , Lane 10). Down-regulation of RI{alpha} was attributable to a sequence-specific effect of antisense, because the 4-base mismatched control oligo could not mimic the effect of antisense (Fig. 1BCitation , Lane 4). Importantly, concomitant with the suppression of RI{alpha} expression was the appearance of RIIß protein, which is not expressed in untreated and mismatched oligo-treated tumors (Fig. 1BCitation , Lanes 9 and 12). Similar induction of RIIß has been observed previously in the single-injection RI{alpha} antisense treatment of LS-174T colon carcinoma in nude mice (8) .

Inappropriate Entry into S Phase.
We next examined whether the growth inhibition induced by RI{alpha} antisense was attributable to changes in cell cycle phase distribution. Growth of LS-174T cells in culture was inhibited by 50% upon a single treatment (0.5 µM, day 5) with antisense RI{alpha} of P-ME DNA or RNA-DNA hybrid (Fig. 2A)Citation . Antisense inhibition of cell growth correlated with suppression of RI{alpha} transcription (Fig. 3B)Citation . Flow cytometric analysis demonstrated that within 18 h, antisense treatment provoked an increase in the population of cells in S phase of the cell cycle (Fig. 2B)Citation . Four-base mismatched and random sequence control oligos, which exhibited no effect on cell growth and RI{alpha} transcription (Figs. 2ACitation and 3)Citation , had no effect on cell cycle phase distribution (data not shown).



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Fig. 2. Antisense induction of cell cycle deregulation in LS-174T colon carcinoma cells. A, cell growth. Data represent means of six determinations from three separate experiments; bars, SD. LS-174T cells were grown as described in "Materials and Methods." Cells were treated with RI{alpha} antisense mixed backbone oligonucleotide HYB0190 (p-ME), or HYB0165 (2'-OMe), and control oligo HYB0295 (2'-OMe C) at 0.5 µM or with saline (C) for 6 days. Cell growth was determined as described (10) . Control oligos HYB0674 and HYB0191 gave the same results as control oligo HYB0295. B, cell cycle analysis. In an attempt to synchronize a homogeneous cell population at a particular cell cycle phase, untreated cells (C) or cells treated with antisense HYB0165(RI{alpha} AS) or control oligo (see Fig. 1Citation A legend) were seeded into a 10-cm-diameter plate at 1 x 106 cells/plate and cultured to confluence. Confluent cells were harvested and reseeded at 1 x 106 cells/plate. After cells attached to the plate (0 h), antisense (2'-OMe AS) or control oligo was added to those pretreated with antisense or control oligo, respectively. After 18 h, cells were harvested and fixed with ice-cold 70% ethanol, and flow cytometric analysis was performed as described in "Materials and Methods." Data represent one of three separate experiments that gave similar results.

 


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Fig. 3. Antisense suppression of RI{alpha} mRNA expression and inhibition of growth in LS-174T colon carcinoma cells. A, cell growth. LS-174T cells were treated with RI{alpha} antisense HYB0165 (2'-O-ME AS) or mismatched control oligonucleotide HYB0295 (MO) at 0.5 µM for 3 and 5 days (see "Materials and Methods"). Data represent average values for three independent experiments; bars, SD. B, RI{alpha} mRNA levels. Northern blotting analysis was performed as described in "Materials and Methods" in control cells and untreated (C), mismatched (MO), and antisense (AS) oligonucleotide treated cells at 0.5 µM for 3, 4, and 5 days. Data represent one of three independent experiments that gave similar results. C, solution hybridization. mRNA levels of RI{alpha} and RIIß were determined by solution hybridization (see "Materials and Methods") of total RNA from untreated cells (C) and cells treated with antisense HYB0165 (AS) and control HYB0295 (MO) oligonucleotides at 0.5 µM for 4 days. Data represent average values of three independent experiments; bars, SD.

 
Sequence-specific Antisense Inhibition of Cell Proliferation in Vitro.
The growth of LS-174T colon carcinoma cells in culture was inhibited by RI{alpha} antisense (HYB0165) in a sequence-specific and time-dependent manner. A single treatment (24 h) of the antisense (see "Materials and Methods") at a concentration of 0.5 µM promoted 20 and 50% growth inhibition at days 3 and 5, respectively, as compared with the saline-treated control cells (Fig. 3A)Citation . By comparison, the mismatched or random sequence oligonucleotide (HYB0295 or HYB0674) treatment (0.5 µM at day 5) had no effect on the cell growth (Fig. 3A)Citation .

Sequence-specific Inhibition of RI{alpha} Expression.
Northern blotting analysis showed that the RI{alpha} antisense treatment resulted in a reduction of RI{alpha} mRNA in a time-dependent manner (Fig. 3BCitation , Lanes 3, 6, and 9). By comparison, the mismatched control oligonucleotide had no effect on RI{alpha} mRNA levels at any time point (Fig. 3BCitation , Lanes 2, 5, and 8).

Solution hybridization experiments confirmed the Northern blotting data. RI{alpha} antisense treatment markedly reduced the level of RI{alpha} mRNA, whereas the mismatched control oligonucleotide had no effect (Fig. 3C)Citation . Importantly, RI{alpha} antisense had no effect on mRNA levels of RII{alpha} (data not shown) or RIIß (Fig. 3C)Citation . Thus, growth inhibition induced by RI{alpha} antisense was correlated with sequence-specific inhibition of RI{alpha} expression.

Up-Regulation of RIIß in Antisense Depletion of RI{alpha}.
Our present and previous studies have shown that depletion of RI{alpha} by the RI{alpha} antisense oligo up-regulates RIIß protein in LS-174T colon carcinoma cells (Fig. 4BCitation ; Ref. 16 ), SKNSH neuroblastoma cells (16) , MCF-7 breast carcinoma cells (17) , and HL60 leukemia cells (18) . Furthermore, RI{alpha} antisense treatment of athymic mice bearing LS-174T colon carcinoma or HCT-15 MDR colon carcinoma results in inhibition of tumor growth, reduction of RI{alpha} and PKA-I expression, the RI{alpha} containing PKA holoenzyme and up-regulation of RIIß and PKA-IIß, the RIIß containing holoenzyme (Fig. 1Citation ; Ref. 8 ).



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Fig. 4. Pulse-labeling analysis of RI{alpha} and RIIß synthesis and Western blotting of RI{alpha} and RIIß in LS-174T colon carcinoma cells treated with RI{alpha} antisense. Untreated cells (C) and cells treated with antisense HYB0165 (AS) or mismatched control oligonucleotide HYB0295 (MO) at 0.5 µM for 4 days were pulse-labeled for 1 h as described in "Materials and Methods." A, pulse-labeling analysis. Cell lysates containing equivalent total trichloroacetic acid-precipitable counts were used to immunoprecipitate RI{alpha} and RIIß proteins with polyclonal affinity-purified RI{alpha} and RIIß antibodies. Immunoprecipitates were solubilized, run on SDS-PAGE gels, and analyzed by autoradiography to assess the levels of newly synthesized RI{alpha} and RIIß. B, Western blot analysis. Cell lysates prepared from untreated cells (C) and cells treated with antisense HYB0165 (AS) or mismatched control oligonucleotide HYB0295 (MO) at 0.2 or 0.4 µM for 4 days, as indicated, were immunoprecipitated with polyclonal affinity-purified RI{alpha} and RIIß antibodies. The immunoprecipitates were solubilized, run on SDS-PAGE gels, and analyzed by autoradiography. Data represent one of three independent experiments that gave similar results.

 
The Rate of Translation of RIIß Protein Remains the Same in Antisense Depletion of RI{alpha}.
To address the mechanism of RIIß compensation in RI{alpha} antisense-treated cells, pulse-labeling experiments were performed in cultured LS-174T cells. No apparent difference was observed in the rate of synthesis of RIIß protein or RI{alpha} protein between untreated control cells, mismatched control oligonucleotide-treated cells, and antisense-treated cells after a 1-h pulse (Fig. 4A)Citation . In contrast, Western blotting analysis showed that RIIß protein levels increased, whereas RI{alpha} protein levels decreased in the antisense-treated cells, compared with untreated control cells (Fig. 4B)Citation . The mismatched control oligonucleotide had no effect on RI{alpha} or RIIß protein levels. These results indicate that the increased RIIß protein level must be attributable to stabilization of the protein.

Increased RIIß Stability in Antisense Depletion of RI{alpha}.
Pulse-chase experiments were performed to determine the half-life of RIIß protein in untreated control, mismatched control oligonucleotide-treated, and antisense-treated LS-174T carcinoma cancer cells. The half-life of RIIß protein in control and mismatched control oligonucleotide-treated cells was 2.0 h as measured by immunoprecipitation of 35S-labeled RIIß protein from cell extracts after a chase with cold methionine. In contrast, the half-life of RIIß protein in antisense-treated cells was 11.0 h (Fig. 5B)Citation . This represents a 5.5-fold increase in the half-life of the RIIß protein upon treatment with RI{alpha} antisense and is in good agreement with the 5-fold increase in RIIß protein observed in Western blotting analysis (Fig. 4B)Citation . The half-life of RI{alpha} was 17 h in control cells, and it decreased to 13 h in RI{alpha} antisense-treated cells (Fig. 5B)Citation . This explains the sharp decrease in the RI{alpha} protein level found in vivo within 24 h of antisense treatment (8) . Importantly, the half-life of RII{alpha} protein did not change, and the half-life of C{alpha} decreased only slightly (18% decrease) in the antisense-treated cells (Fig. 5)Citation .



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Fig. 5. Stabilization of RIIß protein in RI{alpha} antisense-treated LS-174T colon carcinoma cells. Pulse-chase analysis of RI{alpha}, RII{alpha}, RIIß and C{alpha} in cells treated with RI{alpha} antisense HYB0165 (AS), mismatched control oligonucleotide HYB0295 (MO) treated (0.5 µM for 4 days), and untreated control (C) cells was performed as described in "Materials and Methods." Five sets (for five time points) of duplicate 60-mm plates (5 x 105 cells) with antisense-treated, control oligonucleotide-treated, and untreated cells were labeled with 35S and chased for a total of 24 h in growth medium containing 4 mM L-methionine + L-cysteine. Lysates were made at 0, 2, 5, 10, and 24 h of chase. Lysates containing equivalent concentrations of protein were incubated with polyclonal antibodies specific for C{alpha}-, RI{alpha}-, RII{alpha}-, or RIIß-proteins and immunoprecipitated with protein A-Sepharose. The immunoprecipitates were solubilized and centrifuged. The supernatants were run on SDS-PAGE and analyzed by autoradiography (A), and the radioactivities of the supernatants were counted using a liquid scintillation counter (B). Data represent one of three independent experiments that gave similar results.

 
RIIß stabilization was also observed in LNCaP prostate cancer cells treated with RI{alpha} antisense. The half-life of RIIß protein in untreated control cells was 5.0 h, whereas the half-life of RIIß protein in antisense-treated cells was 15.0 h, demonstrating a 3-fold increase in RIIß stability (Fig. 6)Citation . In contrast, the half-lives of RI{alpha}, RII{alpha}, and C{alpha} did not change in the antisense-treated cells (Fig. 6)Citation . The antisense treatment resulted in sequence-specific reduction of RI{alpha} expression and growth inhibition in LNCaP cells (data not shown). These results indicate that modulation of RIIß turnover rate may represent an important biological mechanism underlying the RI{alpha} antisense-induced inhibition of colon and prostate cancer cell growth.



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Fig. 6. Stabilization of RIIß protein in RI{alpha} antisense-treated LNCaP prostate carcinoma cells. Pulse-chase analysis of RI{alpha}, RII{alpha}, RIIß and C{alpha} in cells treated with RI{alpha} antisense HYB0165 (AS) or mismatched control oligonucleotide HYB0295 (MO; 0.5 µM for 4 days) and untreated (C) cells was performed as described in the legend to Fig. 5Citation .

 

    Discussion
 Top
 ABSTRACT
 Introduction
 Materials and Methods
 Results
 Discussion
 REFERENCES
 
We have proposed previously that the RI{alpha} regulatory subunit of PKA-I is an ontogenic growth-inducing protein and that its constitutive expression disrupts normal ontogenic processes, resulting in a pathogenic outgrowth such as cancer (2) . The results presented here confirm this view and suggest that the RI{alpha} antisense, which works through the Watson-Crick base pairing mechanism of action, can serve as a single gene-based therapeutic agent for cancer. The sequence-specific mechanism of action of RI{alpha} antisense is strongly supported by the experimental data that MBO antisense, having an increased hybridizing capacity and nuclease resistance, increased the antisense effect of growth inhibition, whereas the mismatched MBO control oligos could not mimic the antisense effects.

In this study, minimization of the polyanionic nature of the PS-oligo and modifications of the immunostimulatory CpG motif were two important goals for us to demonstrate the sequence-specific antisense effects in the absence of the nonspecific toxicity and side effects of oligonucleotides. We have taken advantage of the reduced polyanionic characteristics of 2'-O-ME RNA and P-ME DNA and substituted a few deoxynucleosides with either 2'-O-ME RNA at both the 3' and 5' termini or P-ME DNA in the center of the PS-oligos, respectively. The overall results of these substitutions are increased affinity to target RNA, stability toward nucleases, and reduced polyanionic-related side effects. In addition, these oligonucleotides retain the capability to induce RNase H because of the presence of PS-oligo (12 , 19) .

The 18-mer RI{alpha} antisense oligo (directed to codons 8–13 of human RI{alpha}; Ref. 8 ) contains "GCGT," a CpG immunostimulating motif (20) at the 5' terminus. This "GCGT" was substituted with four 2'-O-ME RNAs in the 3' and 5' termini-modified RNA-DNA hybrid (HYB0165). This substitution enabled the RI{alpha} antisense to be immunosuppressive rather than immunostimulatory. Substitution of the deoxynucleoside with 2'-O-ME RNA immediately next to the CpG motif at the 5' end significantly suppressed immunostimulatory activity, whereas similar substitutions at the 3' end had no suppressive effect (21) . Thus, the immunostimulatory activity of RI{alpha} antisense PS-oligo has been blocked in HYB0165, which contains a 2'-O-ME RNA modification at the 5' and 3' ends.

The RI{alpha} antisense-induced growth inhibition accompanied deregulation of cell cycle progression. In LS-174T human colon carcinoma cells (Fig. 2B)Citation , RI{alpha} antisense brought about an accumulation of cells in S phase of the cell cycle, indicating inappropriate entry of cells into S phase. This was shown previously for HL-60 human promyeloctic leukemia cells (22) . In the antisense-treated HL-60 cells, the expression of cyclin E peaked throughout S and G2-M phases of the cell cycle. It has been shown previously, using centrifugally elutriated HL-60 cells, that the amount of RI{alpha} sharply increases in the fractions of cells enriched in the G1-early S and late S-early G2-M phases (22) . Thus, RI{alpha}/PKA-I may regulate the entry of cells from G0-G1 phase to the S phase and from S phase to G2-M phase. Suppression of RI{alpha} expression by the antisense oligo may therefore cause deregulation of the cell cycle at two critical points, one at the entry to S phase and the other at the entry to G2-M phase, resulting in accumulation of cells in S phase and leading to apoptosis/differentiation. In fact, in HL-60 cells, RI{alpha} antisense triggered granulocytic differentiation (22) .

A unique feature of RI{alpha} antisense was that its blockade action toward growth-stimulatory RI{alpha} protein expression led to a simultaneous increase in the competitive molecule RIIß, the growth-inhibitory protein of the cAMP signaling (2) . This induction of RIIß caused either no change or a decrease in the expression of RII{alpha}, an isoform of RIIß. Because RII{alpha} is expressed constitutively in every type of cell and forms the more favored complex with the C subunit to form PKA holoenzyme as compared with other R subunits (23) , it may serve as a reservoir to sequester the protein kinase in an inactive holoenzyme. Thus, the ratio of PKA-I:PKA-II would be regulated mainly by levels of RI{alpha} and RIIß, because RII{alpha} remains constant. Importantly, the RI{alpha} antisense blockade of RI{alpha}/PKA-I is unlikely to cause harmful side effects because it will simply reinforce the normal action of PKA-II by up-regulating RIIß.

In this report, we showed that the loss of the RI{alpha} subunit of PKA in RI{alpha} antisense-treated cancer cells in culture is compensated by the up-regulation of RIIß subunit. This RIIß up-regulation resulted from an increase in the half-life of RIIß protein, with no change in the RIIß mRNA level or the rate of RIIß protein synthesis. These in vitro findings are consistent with observations made in tumors in vivo. We have shown in present and previous studies (Fig. 1Citation ; Ref. 8 ) that the growth inhibition of human colon carcinoma in nude mice induced by the RI{alpha} antisense treatment is accompanied by the specific up-regulation of RIIß and PKA-IIß.

LS-174T colon carcinoma and LNCaP prostate carcinoma cells mainly express RI{alpha}, RII{alpha}, and C{alpha} subunits of PKA and RIIß subunit at an undetectable level (10) . The loss of RI{alpha} induced by the antisense may result in increased concentrations of free "C" subunit. In the in vivo tumor experiments, we have shown that RIIß rapidly responds to this perturbation through association with "C" subunit to form a holoenzyme complex (8) . RIIß in the holoenzyme complex (PKA-IIß) may be stabilized and therefore exhibit an increased half-life as shown in cultured cells (Figs. 5Citation 6)Citation . This results in an increase in the level of RIIß protein in cancer cells that otherwise overexpress RI{alpha}. Through this biochemical adaptation, the antisense-treated cancer cells change the ratio of PKA-I:PKA-II to a ratio similar to that of normal cells.

Experiments in cell culture have shown that C subunits preferentially assemble with RII subunits rather than RI subunits (10 , 24 , 25) . Preferential binding of RII subunits to C subunits probably does not occur because of intrinsic differences between RI and RII in their affinity for C, because these affinities have been shown in vitro to be quite similar (26) . Instead, it may be attributable to a lower Ka for cAMP-activation of PKA-I compared with PKA-II. Free RI subunits have been shown to have a higher affinity for cAMP than do RII subunits. The Ka values of cAMP binding to RI range from 0.1 to 1 nM (27 , 28) , whereas the Ka values for RII-cAMP binding range from 4 to 6 nM (29 , 30) . Given the enhanced sensitivity to activation of RI-containing holoenzyme, we predict that PKA-I, but not PKA-II, is the functional isozyme carrying out cAMP-mediated effects in cells under unstimulated physiological states.

Cancer cell lines and primary tumors have been shown to contain a higher level of RI/PKA-I than RII/PKA-II compared with normal cells (2 , 5) . HL-60 leukemia cells mainly express RI{alpha}/PKA-I. Upon treatment with 8-Cl-cAMP, which selectively down-regulates PKA-I, RIIß and PKA-IIß are induced, and cells are arrested in growth (31) . The PKA-I isozyme is present in transformed but not in untransformed NIH3T3 cells (32) . Overexpression of RIIß in an expression vector in Ki-ras-transformed NIH3T3 cells results in up-regulation of PKA-IIß, elimination of PKA-I, and reversion of the phenotype to that of untransformed fibroblasts (33) . During differentiation of Friend erythroleukemia cells, induction of RIIß coincides with the elimination of PKA-I and with increased PKA-II levels (34) . These studies, together with our present study, suggest the cells’ capacity to maintain cAMP-mediated control of cellular functions, such as growth control. An important role for RIIß in this process is also suggested.

The stabilization of the RIIß protein via its prolonged half-life may also represent an important biological mechanism for cAMP-induced cell differentiation. This mechanism may maintain equivalent amounts of R and C subunits, thus protecting the cell from unregulated C subunit activity and rescuing the C subunit from rapid proteolysis. Importantly, this biochemical adaptation provides a very effective mechanism for regulating the ratio of PKA-I to PKA-II holoenzyme formed in a given tissue. For cancer cells, which deviate from the normal ratio of PKA-I to PKA-II and have increased type I PKA, this capacity of RIIß, which replaces RI{alpha} in associating with the C subunit, may provide an important biological mechanism to normalize the PKA isozyme ratio and sustain inhibition of tumor growth. Importantly, that RI{alpha} antisense triggers stabilization/up-regulation of a competitor molecule, RIIß, in cancer cells that otherwise overexpress RI{alpha} represents a true antisense mechanism, i.e., sequence-specific inhibition of gene expression, leading to sustained inhibition of PKA-I expression and tumor growth.


    ACKNOWLEDGMENTS
 
We thank Sudhir Agrawal (Hybridon, Inc., Milford, MA) for providing the oligonucleotides.


    FOOTNOTES
 
The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked advertisement in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.

1 The abbreviations used are: cAMP, cyclic AMP; PKA, cAMP-dependent protein kinase; PKA-I, type I PKA; PKA-II, type II PKA; R, regulatory subunit of PKA; C, catalytic subunit of PKA; DOTAP, N-[1-(2,3-dioleoyloxy)propyl]-N,N,N-trimethyammonium methylsulfate; MBO, mixed backbone oligonucleotide; PS-oligo, phosphorothioate oligodeoxynucleotide; MDR, multidrug resistance. Back

2 To whom requests for reprints should be addressed, at National Cancer Institute, Building 10, Room 5B05, 9000 Rockville Pike, Bethesda, MD 20892-1750. Phone: (301) 496-4020; Fax: (301) 480-8587; E-mail: chochung{at}helix.nih.gov Back

Received 3/23/00; revised 6/29/00; accepted 7/ 3/00.


    REFERENCES
 Top
 ABSTRACT
 Introduction
 Materials and Methods
 Results
 Discussion
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