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Molecular Oncology, Markers, Clinical Correlates |
Academic Medical Center, University of Amsterdam, Emma Childrens Hospital, and Departments of Clinical Chemistry and Neurogenetics, 1100 DE Amsterdam, the Netherlands [A. B. P. v. K., R. M., L. Z., F. B., A. H. v. G.]; University Medical Center Utrecht, Department of Medical Oncology, 3508 GA Utrecht, the Netherlands [B. A. Z.]; and Kobe Gakuin University Igawadani-cho, Kobe, Japan [K. M., N. T.]
| ABSTRACT |
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| INTRODUCTION |
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DPD catalyzes the conversion of 5FU to FUH2, which is the initial and rate-limiting step in this catabolism (Fig. 1)
. FUH2 can be additionally degraded to fluoro-ß-ureidopropionate and subsequently to fluoro-ß-alanine by DHP and ß-ureidopropionase, respectively. The pivotal role of DPD in chemotherapy using 5FU has been shown in cancer patients with a complete or partial deficiency of this enzyme. These patients suffered from severe toxicity, including death, after the administration of 5FU (5, 6, 7, 8)
. A number of these patients proved to be heterozygous or homozygous for a mutant DPYD allele (5, 6, 7, 8, 9)
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| MATERIALS AND METHODS |
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Determination of the DPD and DHP Activity.
The activity of DPD in peripheral blood mononuclear cells was determined using a radiochemical assay with subsequent separation of radiolabelled thymine from radiolabelled dihydrothymine with reversed-phase HPLC (14)
. The activity of DHP was determined in an assay mixture containing 100 mM Tris-HCl (pH 8.0), 1 mM DTT, and 500 µM [2-14C]-dihydrouracil (1.852.22 GBq/mmol; Moravek Biochemicals, Brea, CA). Separation of radiolabelled dihydrouracil from N-carbamyl-ß-alanine was performed isocratically [50 mM NaH2PO4 (pH 4.5) at a flow rate of 1 ml/min] by reversed-phase HPLC on a Supelcosil LC-18-S column (250 x 4.6 mm; 5 µm particle size) with on-line detection of radioactivity (15)
. Protein concentrations were determined with a copper-reduction method using bicinchoninic acid, essentially as described by Smith et al. (16)
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PCR Amplification of Coding Exons.
DNA was isolated from granulocytes by standard procedures. The PCR amplification of all nine of the coding exons and flanking intronic regions was carried out using the primer sets as described previously (17)
. However, for exon 5, the sequence of the reverse primer was 5'-GGATCCAGATGGGAGGAC-3'. Forward primers had a 5'-TGTAAAACGACGGCCAGT-3' extension, whereas reverse primers had an 5'-CAGGAAACAGCTATGACC-3' extension at their 5'-ends. These sequences were complementary to the labeled -21M13 and M13 reversed primers used in the dye-primer sequence reaction. Amplification of all of the exons was carried out in 50-µl reaction mixtures containing 10 mM Tris-HCl (pH 8.3), 50 mM KCl, 1.52.5 mM MgCl2, 10 pmol of each primer, 200 µM of each dNTP, and 2 units of Taq polymerase (Promega Benelux B.V., Leiden, the Netherlands). After initial denaturation for 5 min at 96°C, amplification was carried out for 35 cycles (0.25 min 96°C, 0.5 min 60°C, and 0.5 min 72°C). PCR products were separated on 1% agarose gels, visualized with ethidium bromide, and purified using a Qiaquick Gel Extraction kit (Qiagen, Hilden, Germany) or used for direct sequencing.
Expression of DHP in E. coli.
An expression plasmid containing the wild-type human DHP cDNA (pSE420-DHP) was constructed by subcloning the EcoRI-BamHI insert of a plasmid, containing the complete coding region of the cDNA encoding human DHP, into the pSE420 vector (18)
. The 833G>A mutation (G278D) was introduced into the human DHP sequence using the megaprimer technique and subsequently subcloned in a pSE420 vector (pSE420-DHP-G278D). The resulting clones were sequenced completely to verify the presence of the mutation and to exclude the presence of random mutations introduced by PCR artifacts. Expression plasmids were introduced into the E. coli strain BL21. A 5-ml Luria-Bertani broth culture, supplemented with 50 µg/ml ampicillin, was inoculated with 100 µl of an overnight preculture grown in Luria-Bertani broth. Cells were grown for 3 h at 37°C, and induction was performed by the addition of isopropyl-ß-D-thiogalactoside to a final concentration of 1 mM. Cells were sedimented after 3 h, washed with an isolation buffer [35 mM potassium phosphate (pH 7.4) and complete; Roche Diagnostics, Almere, the Netherlands] and resuspended in 500 µl of isolation buffer. The cell suspension was frozen for 16 h at -20°C, thawed on ice, and lysed by sonication. The crude lysate was centrifuged at 18,000 x g for 15 min, and the resulting supernatant was stored at -80°C.
Western Blot Analysis.
Cell extracts (2.5 µg) were fractionated on a 7.5% (w/v) SDS-polyacrylamide gel and transferred to a nitrocellulose filter. Blocking of the membrane was performed for 16 h with TBS [25 mM Tris, 137 mM NaCl, and 2.7 mM KCl (pH 7.4)] containing 5% (w/v) nonfat dry milk. Subsequently, the membrane was incubated for 1 h with a 1:1000 dilution of rabbit antirat DHP polyclonal antibody in TBS, supplemented with 0.05% (v/v) Tween 20. The membranes were washed three times (5 min each) with TBS containing 0.05% (v/v) Tween 20 and incubated for 45 min with TBS containing 0.05% (v/v) Tween 20, 5% (w/v) nonfat dry milk, and a 1:5000 dilution of a pig antirabbit secondary antibody conjugated to horseradish peroxidase (Dako, Copenhagen, Denmark). After rinsing the membrane three times (5 min each) with TBS containing 0.05% Tween 20, detection of DHP was performed with enhanced chemiluminescence (Amersham Pharmacia Biotech, Buckinghamshire, United Kingdom).
DHPLC Analysis of the 833G>A Mutation.
PCR fragments containing exon 5 were analyzed on a Agilent 1100-DHPLC system (Agilent Technologies Netherlands B.V., Amstelveen, the Netherlands). The buffer system for the DHPLC consisted of buffer A [0.1 M triethylammonium acetate and 1 mM EDTA (pH 7.0)] and buffer B [buffer A supplemented with 25% (v/v) acetonitrile]. Before injection, PCR fragments were denatured at 95°C followed by slow renaturation. PCR fragments (5 µl) were loaded in 40% buffer B on a Zorbax ds DNA column (Agilent Technologies Netherlands B.V.) and subsequently eluted, within 6 min at 65°C, with a gradient from 5565% buffer B.
Sequence Analysis.
Sequence analysis of genomic fragments amplified by PCR and expression plasmids was carried out on an Applied Biosystems model 3100 automated DNA sequencer using the dye-terminator and the dye-primer method (Perkin-Elmer Corp., Foster City, CA), respectively.
| RESULTS |
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DPD Activity and Dihydropyrimidines in Plasma.
A normal activity of DPD was detected in peripheral blood mononuclear cells of the patient (13.1 nmol/mg/h; controls 9.9 ± 2.8; n = 54), thus excluding a (partial) deficiency of DPD as the underlying cause of the severe toxicity, after the administration of 5FU. To investigate whether the severe toxicity might have been caused by a complete deficiency of DHP, plasma was collected to determine the levels of 5,6-dihydrouracil and 5,6-dihydrothymine. A normal concentration of 5,6-dihydrouracil (3.9 µM; controls 2.2 ± 3.1 µM; n = 97) and a high-normal concentration of 5,6-dihydrothymine (1.44 µM; controls 0.7 ± 0.4 µM; n = 97) were detected in plasma. The concentration of 5,6-dihydrothymine was at the upper limit of the 95% distribution range of the control population.
Sequence Analysis of the DHP Gene.
Analysis of the genomic sequences of exons 19 of the DHP gene showed that the tumor patient was heterozygous for a missense mutation 833G>A in exon 5, leading to the amino acid substitution G278D (Fig. 2)
. In addition, the patient proved to be homozygous for a -1T>C mutation and heterozygous for a silent mutation 216C>T (F72F) in exon 1. No missense mutations could be detected in the DHP gene of 22 other patients, with normal DPD activity, but who suffered nevertheless from severe 5FU associated-toxicity.
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Expression Analysis of the G278D Mutation.
To investigate the effect of the mutation G278D on the activity of DHP, the mutation was introduced into the pSE420-DHP vector by site-directed mutagenisis and expressed in E. coli. No endogenous DHP activity (< 0.01 nmol/mg/h) could be detected in the E. coli strain used for the expression of the constructs. Introduction of the wild-type DHP construct increased the DHP activity >61,000-fold above the background. Expression of the DHP construct containing the G287D mutation yielded no detectable activity of DHP (Fig. 3)
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Population Screening for the 833G>A Mutation.
Screening of individuals for the presence of the 833G>A mutation was performed with DHPLC. Fig. 4
shows that there is a clear separation between heteroduplex DNA from homoduplex DNA. Therefore, distinctive chromatographic patterns were obtained for PCR fragments containing the 833G>A mutation or the wild-type sequence. An analysis for the presence of the 833G>A mutation in 96 Dutch Caucasians did not identify individuals either heterozygous or homozygous for this mutation. Thus, the allele frequency of the 833G>A mutation in the normal population is <0.5%.
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| DISCUSSION |
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To investigate the role of DHP, the second enzyme of the 5FU catabolic pathway, in the etiology of 5FU toxicity, we have analyzed the DHP gene of 23 tumor patients with normal DPD activity but, nevertheless, suffering from severe toxicity for the presence of mutations. One of these patients proved to be heterozygous for a 833G>A mutation in exon 5, and heterologous expression of this mutation showed that the mutant DHP protein bore no residual activity.
DHP deficiency is an autosomal recessive disease characterized by dihydropyrimidinuria and has been associated with a variable clinical phenotype (10, 11, 12 , 17) . Loading studies with uracil, in patients suffering from a complete DHP deficiency, showed strongly elevated levels and prolonged retention of uracil and dihydrouracil in serum, with >80% of the administered dose being excreted either unchanged or in the form of dihydrouracil during the first 24 h after the load (10 , 11) . In individuals heterozygous for a mutant DHP allele, the urinary concentration of dihydrouracil was several fold higher compared with that observed in controls, after loading with uracil (12) . Under normal conditions, a low DHP activity is probably sufficient to maintain dihydrouracil and dihydrothymine homeostasis as heterozygotes do not excrete elevated levels of dihydropyrimidines. After the loading of such patients with uracil, the accumulation of dihydrouracil in urine increased several fold compared with normal individuals, indicating a decreased capacity of heterozygotes to degrade dihydropyrimidines (12) . In this respect, it is worthwhile to note that the coadministration of FUH2 with 5FU attenuated the antitumor activity and increased the toxicity of 5FU (20) . Furthermore, in the presence of elevated concentrations of dihydropyrimidines, the reverse reaction, catalyzed by DPD, toward the pyrimidine bases is stimulated (10 , 21) . Thus, the decreased capacity to degrade FUH2 and 5FU, because of a decreased DHP activity, might be directly responsible for the observed toxicity in the study patient. In this respect, it is worthwhile to note that neutropenia has also been associated with a partial deficiency of DPD (5 , 7 , 8) .
The identification of genetic factors predisposing patients for development of severe 5FU-associated toxicity is increasingly being recognized as an important field of study. It has been shown recently that the C677T polymorphism in the methylenetetrahydrofolate reductase gene might be responsible for the severe toxicity observed in some breast cancer patients receiving adjuvant treatment with cyclophosphamide, methotrexate, and 5FU (22) . In addition, it has been suggested that a polymorphism in the enhancer region of the thymidylate synthase gene promoter is associated with toxicity toward 5FU (23) .
Our results indicate that a partial DHP deficiency is not a major determinant in the etiology of 5FU toxicity. To date, only 9 individuals suffering from a complete DHP deficiency have been reported, which, to some extent, may be because of the lack of specific and efficient methods in most laboratories to detect the dihydropyrimidines. In fact, the prevalence of a DHP deficiency in Japan has been estimated to be 1 in 10,000, which is comparable with the estimated frequency of patients with a DPD deficiency in the Netherlands (6) . Therefore, a DHP deficiency might be less rare than generally assumed.
| ACKNOWLEDGMENTS |
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| FOOTNOTES |
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1 To whom requests for reprints should be addressed, at Academic Medical Center, Laboratory Genetic Metabolic Diseases, F0224, Meibergdreef 9, 1105 AZ Amsterdam, the Netherlands. Phone: 31-205665958; Fax: 31-206962596; E-mail: a.b.vankuilenburg{at}amc.uva.nl ![]()
2 The abbreviations used are: 5FU, 5-fluorouracil; DHP, dihydropyrimidinase; DHPLC, denaturing high performance liquid chromatography; DPD, dihydropyrimidine dehydrogenase; DRP, dihydropyrimidinase-related protein; FUH2, fluoro-5,6-dihydrouracil; HPLC, high-performance liquid chromatography; TBS, Tris-buffered saline; CMF, cyclophosphamide, methotrexate, and fluorouracil. ![]()
Received 3/21/03; revised 5/21/03; accepted 5/27/03.
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