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Molecular Oncology, Markers, Clinical Correlates |
Department of Experimental Pathology [M. B., F. F., C. B., E. M., C. T., G. S., C. F.], Breast Cancer Unit, Department of Pathology [C. C., D. S.], and Breast Cancer Surgical Unit, 1st Surgical Clinic [M. T.], University of Bologna, 40126 Bologna; Center for Applied Biomedical Research, St. Orsola University Hospital, 40126 Bologna [C. C.]; and Department of Gerontological Research, Italian National Research Center on Aging, 60189 Ancona [F. O., C. F.], Italy
| ABSTRACT |
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Experimental Design: We assessed the p53 codon 72 genotype in DNA from disease-free lymph nodes and neoplastic tissues obtained from 67 women affected by breast cancer who underwent surgical resection at the Bologna Breast Cancer Surgical Unit from 1993 to 1995.
Results: We found that the retention of the p53 codon 72 arginine allele in the tumor tissue of proline/arginine heterozygous breast cancer patients is associated with statistically significant reduced disease-free and overall survivals.
Conclusions: Our findings suggest that the genotyping for p53 codon 72 locus in both the tumor tissue and in the lymph node of breast cancer patients could contribute to identify a subset of arginine/proline heterozygous patients who have a reduced survival that is associated with the specific retention of the arginine allele in the tumor tissue.
| INTRODUCTION |
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Case-control studies have suggested that p53 codon 72 polymorphism modulates the susceptibility to various malignancies, including breast cancer, but contrasting data have been obtained thus far (3 , 10, 11, 12) .
Recent studies found that the p53 codon 72 arginine allele is preferentially retained in the neoplastic tissue of arginine/proline heterozygous patients affected by common carcinomas, such as vulval, esophageal, urinary tract, and lung cancer (13, 14, 15, 16, 17) . Furthermore, in at least the case of head and neck cancer, the presence of an arginine-mutated allele was found to be related with a reduced sensitivity to cancer therapy (18) .
On the basis of this literature the aim of this study was to test the hypothesis that p53 codon 72 genotype, evaluated both in the tumor tissue and in the disease-free lymph node, is related to disease-free survival and overall survival of breast cancer-affected patients.
| MATERIALS AND METHODS |
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Samples.
The tumors were histologically classified and staged according to WHO criteria and Union Internationale Conte le Cancer Tumor-Node-Metastasis system, respectively. Histologically, 60 cases were ductal not otherwise specified carcinomas, 6 were classified as infiltrating lobular carcinomas, and 1 as mucoid carcinoma. Invasive ductal carcinoma and, when predominant, the ductal component of the mixed ductal/lobular type were histologically graded (G) following Elston and Elliss method.
The tumors were also typed by NG2 as follows: mild (NG1), moderate (NG2), and severe (NG3) nuclear atypia. Tumor size (pT) and the presence or absence of regional lymph node involvement (pN+ and pN0, respectively) was also recorded.
Immunohistochemistry and Image Cytometry.
Serial sections from formalin-fixed, paraffin-embedded tissue blocks were collected on 3-aminopropyltriethoxy-sylane (Sigma Chemical Co., St. Louis, MO) coated slides, dried overnight at 37°C, and processed for immunohistochemistry according to a streptavidin-biotin-peroxidase preformed complex technique. The following MoAbs, all from BioGenex Laboratories (San Ramon, CA), were used: anti-ER clone 1D5, diluted 1:120; anti-PR clone 1A6, diluted 1:65; anti-Ki-67 protein clone Ki-67, diluted 1:100; and anti-ErbB-2 protein clone CB11, diluted 1:200. Microwave pretreatment was performed with citrate buffer solution (pH 6.0) using anti-ER, -Ki-67, and -PR MoAbs, or with EDTA buffer solution (pH 8.0) for anti-ErbB-2 MoAb (19)
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Eight serial sections were obtained from each block of normal lymph nodes, histologically selected for DNA extraction. The first and last section (4-µm thick) were immunostained using an antiwide spectrum cytokeratin MoAb, clone MNF116 (DakoCytomation, Glostrup, Denmark), diluted 1:160 with a Proteinase K treatment, to exclude micrometastasis.
Nuclear immunostaining of ER, PR, and Ki-67 was quantified by image cytometry with Cytometrica software (C&V, Bologna, Italy) as detailed previously (19)
. A labeling index was obtained and expressed as the percentage of the labeled nuclear area over the total neoplastic nuclear area (%LIa), and was categorized using the following cutoff values: negative = ER and PR %LIa <10%, Ki-67 <20%LIa; and positive = ER and PR %LIa
10%, Ki-67
20% LIa.
ErbB-2 overexpression was evaluated according to a semiquantitative method and categorized as follows: negative if
25% neoplastic cells were positive; and positive if >25% neoplastic cells were positive (20)
.
DNA Extraction and Labeling.
Neoplastic DNA was extracted from 67 breast carcinoma tissue fragments. Part of each neoplastic tissue specimen was immediately frozen and stored at -80°C for subsequent DNA extraction using the Qiamp Tissue kit (Qiagen, GmbH, Hilden, Germany). Only samples showing a percentage of neoplastic cells >50% were used for DNA extraction, and both CGH and PCR analysis (21
, 22)
. The percentage of neoplastic versus stromal and inflammatory cells was evaluated in the H&E-stained sections of each sample.
Normal DNA from each patient was obtained from noninfiltrated (cytokeratine negative) lymph nodes. Briefly, five to six sections, 10-µm thick, were cut from each sample. After deparaffination by xylene and absolute ethanol washing, the sections were scraped by a sterile razor blade, put in tubes, and digested by Proteinase K (0.02 mg/ml) in 50200 µl of DNA extraction buffer [Tris-EDTA (pH 8.0)] for 3 h at 55°C. The tubes were put in boiling water for 10 min to stop the reaction.
CGH.
One µg of normal reference DNA and 1 µg of tumor DNA were labeled by nick translation. Normal DNA was labeled by Digoxigenin-11-dUTP (Roche, Basel, Switzerland) and tumor DNA by Biotin-16-dUTP (Roche), and analyzed as described previously (22)
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In those cases in which CGH analysis was not available, the allele loss at p53 codon 72 locus was assessed by genotyping the p53 intron 1 VNTR, using primers p53VNTRFW5'ACTCCAGCCTGGGCAATAAGAGCT-3' and p53VNTRRW5'-ACAAAACATCCCCTACCAAACAGC-3' (10 pmol each) following a standard PCR protocol. The analysis allowed for the detection of six different alleles.3
Genotyping.
p53 codon 72 alleles were amplified using the primer pair 5'-GCA GAGACC TGT GGG AAG CGA-3' and 5'-ACC GTA GCT GCC CTG GTA GGT-3'. PCR cycling conditions were as follows: 1 min at 94°C, 1 min at 65°C, and 1 min at 72°C, for 31 cycles. The protocol was also carried out for 35 cycles by an independent operator to obtain a replicated assay for each sample. In no cases were discrepancies found between repeated samples. Fifteen µl of PCR products were digested with BstUI restriction enzyme (New England Biolabs) as recommended by the supplier, and fragments were separated on 2% agarose gel. The arginine allele was identified by the presence of the restriction BstUI enzyme recognition sites. In six samples, three for each genotype, p53 codon 72 genotype was confirmed by PCR amplification of p53 exon 4 (primers pairs: 5'-GCAGAGACCTGTGGGAAGCGA-3' and 5'-ACCGTAGCTGCCCTG GTAGGT-3') followed by Automatic sequencing in a CEQ2000 Automatic Sequencer (Beckman).
Statistical Analysis.
The relationship between a continuous and a categorical variable was tested using the unpaired t test. Fishers exact test was performed when differences in the distribution of categorical variables between groups were tested. DFS and OS were computed and compared using Kaplan-Meier and log-rank (Mantel-Cox) tests, respectively. Prognostic significance was evaluated using Cox proportional hazards model.
OS was calculated from the date of surgery to last contact if alive (censored) or death (event). DFS was calculated from the date of surgery to last contact if alive (censored) or to date of relapse or death, whichever come first (event). Patient death of other diseases was recorded, and patient follow-up was considered censored at this time. The analysis was performed in January 2003. The analysis was conducted using StatView 5.0 statistical software (SAS Institute Inc., Cary, NC).
| RESULTS |
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The clinical-pathological features, namely tumor size (pT), nodal involvement (pN), grading (G), NG, and biopathological parameters, namely ER, PR, ErbB-2, and Ki-67 expression were evaluated in the group of patients who retained the arginine allele in the tumor tissue (n = 7, named as ALp53Arg) and in those who showed no changes between the genotype in the lymph node and in the tumor tissue (n = 58, named as GLp53; Table 1
). No significant differences in the distribution of clinical and biopathological parameters between ALp53Arg and GLp53patients were found. Interestingly, all of the ALp53Arg tumors were found to be positive for ER staining even if this difference was not significant (P = 0.06; Table 1
).
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| DISCUSSION |
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The preferential retention of the arginine allele in the neoplastic tissue has been described in several carcinomas, such as head and neck, vulval, esophageal, urinary tract, and lung cancer (13, 14, 15, 16, 17) . As far as breast cancer, it has been proposed that p53 codon 72 polymorphism may affect the function of p53 mutations, and confers a growth advantage for tumors in which the mutation resides on the arginine allele (23) . As a functional basis for this phenomenon, it has been proposed that mutated p53 arginine but not proline allele is capable of inactivating p73-dependent apoptosis (18) . However, p73 involvement in breast cancer biology has not yet been clearly established, and both its down- and up-regulation have been associated with tumor progression and aggressiveness (24 , 25) . In this patient series, because of the scarce sample availability and quality, neither the p53 mutation analysis nor p73 staining could be reliably determined; thus, the role of the interplay between p53 mutations and p73 function in the results presented here requires additional investigation. However, it should be taken into account that p53 codon 72 arginine and proline allele differ in a number of functions, such as the capacity to elicit apoptosis, to localize to the mitochondria, to be degraded by the proteasome, and to modulate gene transcription, and, thus, several p53-mediated functions could explain the data reported here (5 , 6 , 9) .
In conclusion, genotyping for p53 codon 72 locus in both the tumor tissue and in the lymph node of breast cancer patients contributes to identify a subset of arginine/prolineheterozygous patients who, despite the fact that they seem to display the same clinical features as the rest of the patients at the time of the diagnosis, have a reduced survival, which is associated with the specific retention of the arginine allele in the tumor tissue.
| FOOTNOTES |
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Supported in part by a grant from AIRC (Italian Association for Cancer Research), by Ministry of Health "Progetto finalizzato 2000: marcatori genetici e biologici di invecchiamento normale e patologico" and E.U. Project Functionage. For CGH analysis, Fulvia Farabegoli was supported by a short-term European Molecular Biology Organization fellowship (ASTF 9620).
1 To whom requests for reprints should be addressed, at Department of Experimental Pathology University of Bologna, Bologna, Italy. Phone: 39-051-209-4739; Fax: 39-051-209-4747; E-mail: macho123{at}alma unibo.it. ![]()
2 The abbreviations used are: NG, nuclear grading; MoAb, monoclonal antibody; ER, estrogen receptor; PR, progesterone receptor; %Lia, percentage labeling index area; CGH, comparative genomic hybridization; VNTR, variable number of tandem repeats; DFS, disease-free survival; OS, overall survival; AR, allelic retention. ![]()
3 M. Bonafè, C. Barbi, F. Olivieri, E. Marzi, and C. Franceschi, unpublished observations. ![]()
Received 3/19/03; revised 7/ 8/03; accepted 7/14/03.
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