Table 3.

188 probe sets differentially expressed between N0 samples and N+ samples

Upregulated in N0
RankParametric P valueFDRFold-changeProbe setGene symbolDescription
10.00000120.0422.054222146_s_atTCF4transcription factor 4
30.00000230.0421.623209250_atDEGS1degenerative spermatocyte homologue 1, lipid desaturase (Drosophila)
40.00000640.0751.795212387_atTCF4transcription factor 4
50.00000690.0752.173203753_atTCF4transcription factor 4
70.00001420.1112.165226931_atTMTC1transmembrane and tetratricopeptide repeat containing 1
80.00001680.1151.979212382_atTCF4transcription factor 4
90.00001970.1201.684232304_atPELI1pellino homologue 1 (Drosophila)
100.00002210.1211.3911559249_atATXN1ataxin 1
110.00002640.1251.556209281_s_atATP2B1ATPase, Ca++ transporting, plasma membrane 1
120.00003180.1251.473221683_s_atCEP290centrosomal protein 290kDa
130.00003230.1252.795226084_atMAP1Bmicrotubule-associated protein 1B
150.00003440.1251.504212509_s_atMXRA7matrix-remodelling associated 7
160.00004140.1271.807214724_atDIXDC1DIX domain containing 1
170.00004160.1271.818212386_atTCF4transcription factor 4
180.00004290.1271.791213891_s_atTCF4transcription factor 4
190.00004450.1271.571226546_atNot available
200.00004830.1271.672226676_atZNF521zinc finger protein 521
210.00004950.1272.243227812_atTNFRSF19tumor necrosis factor receptor superfamily, member 19
220.00005130.1272.269226322_atTMTC1transmembrane and tetratricopeptide repeat containing 1
230.00005620.1342.047225946_atRASSF8Ras association (RalGDS/AF-6) domain family 8
240.00006270.1411.528235834_atCALD1caldesmon 1
250.00006550.1411.7861554007_atZNF483zinc finger protein 483
260.00006770.1411.668231869_atZNF451zinc finger protein 451
280.00007380.1411.369207604_s_atSLC4A7solute carrier family 4, sodium bicarbonate cotransporter, member 7
290.00007480.1412.051235599_atLOC339535hypothetical protein LOC339535
300.00007920.1431.382202126_atPRPF4BPRP4 pre-mRNA processing factor 4 homologue B (yeast)
310.00008100.1431.704235592_atELL2elongation factor, RNA polymerase II, 2
320.00008490.1451.516208662_s_atTTC3tetratricopeptide repeat domain 3
340.00009130.1471.674209682_atCBLBCas-Br-M (murine) ecotropic retroviral transforming sequence b
360.00009770.1481.682204466_s_atSNCAsynuclein, alpha (non A4 component of amyloid precursor)
370.00010400.1541.249206862_atZNF254zinc finger protein 254
380.00011400.1611.384202144_s_atADSLadenylosuccinate lyase
390.00011460.1611.548225246_atSTIM2stromal interaction molecule 2
400.00012430.1701.504204964_s_atSSPNsarcospan (Kras oncogene-associated gene)
410.00012740.1701.341236796_atBACH2BTB and CNC homology 1, basic leucine zipper transcription factor 2
420.00013750.1771.364206240_s_atZNF136zinc finger protein 136
430.00014020.1772.443202468_s_atCTNNAL1catenin (cadherin-associated protein), alpha-like 1
440.00014240.1771.724229307_atANKRD28ankyrin repeat domain 28
460.00016600.1961.665214741_atZNF131zinc finger protein 131
470.00017190.1961.554202909_atEPM2AIP1EPM2A (laforin) interacting protein 1
500.00018270.1982.587238852_atPRRX1paired related homeobox 1
510.00018460.1981.892224911_s_atDCBLD2discoidin, CUB and LCCL domain containing 2
520.00019090.1991.930214247_s_atDKK3dickkopf homologue 3 (Xenopus laevis)
530.00019270.1992.111202149_atNEDD9neural precursor cell expressed, developmentally down-regulated 9
540.00019960.2001.236242470_atEID2BEP300 interacting inhibitor of differentiation 2B
550.00020150.2002.131212190_atSERPINE2serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2
580.00023820.2111.233225417_atEPC1enhancer of polycomb homologue 1 (Drosophila)
600.00023960.2111.574223519_atZAKsterile alpha motif and leucine zipper containing kinase AZK
620.00024220.2111.739220145_atMAP9microtubule-associated protein 9
630.00024330.2111.402220917_s_atWDR19WD repeat domain 19
640.00025200.2151.300214078_atPAK3p21 (CDKN1A)-activated kinase 3
650.00027000.2221.807213954_atKIAA0888KIAA0888 protein
660.00027960.2221.479208993_s_atPPIGpeptidylprolyl isomerase G (cyclophilin G)
670.00027990.2221.433209537_atEXTL2exostoses (multiple)-like 2
680.00028150.2221.226230212_atSPRY1sprouty homologue 1, antagonist of FGF signaling (Drosophila)
690.00028600.2221.982204359_atFLRT2fibronectin leucine rich transmembrane protein 2
700.00028680.2221.370221829_s_atTNPO1transportin 1
710.00029320.2221.731229228_atCREB5cAMP responsive element binding protein 5
720.00029360.2221.606215716_s_atATP2B1ATPase, Ca++ transporting, plasma membrane 1
740.00030770.2251.567204422_s_atFGF2fibroblast growth factor 2 (basic)
760.00031230.2251.550202207_atARL4CADP-ribosylation factor-like 4C
770.00032030.2251.385225324_atCRLS1cardiolipin synthase 1
820.00036900.2451.296232064_atNot available
840.00038940.2491.742219765_atZNF329zinc finger protein 329
850.00039530.2491.896235102_x_atGRAPGRB2-related adaptor protein
860.00039550.2491.451218263_s_atZBED5zinc finger, BED-type containing 5
870.00039980.2491.661233223_atNEDD9neural precursor cell expressed, developmentally down-regulated 9
880.00040240.2491.736212385_atTCF4transcription factor 4
940.00044670.2491.372202379_s_atNKTRnatural killer-tumor recognition sequence
950.00044740.2491.987221958_s_atGPR177G protein-coupled receptor 177
960.00045630.2492.021212233_atMAP1Bmicrotubule-associated protein 1B
980.00046320.2491.470229504_atRAB23RAB23, member RAS oncogene family
1000.00047880.2491.377214212_x_atPLEKHC1pleckstrin homology domain containing, family C (with FERM domain) member 1
1010.00048090.2491.529212985_atNot available
1020.00048470.2491.319218724_s_atTGIF2TGFB-induced factor homeobox 2
1030.00048480.2491.681221898_atPDPNpodoplanin
1050.00048780.2491.358207719_x_atCEP170centrosomal protein 170kDa
1060.00048790.2491.434201363_s_atIVNS1ABPinfluenza virus NS1A binding protein
1080.00049770.2491.639209763_atCHRDL1chordin-like 1
1100.00050010.2491.976205498_atGHRgrowth hormone receptor
1110.00052230.2511.871232113_atNot available
1150.00053100.2511.337215164_atTCF4transcription factor 4
1160.00053200.2511.783222313_atCNOT2CCR4-NOT transcription complex, subunit 2
1180.00057710.2611.467224763_atRPL37ribosomal protein L37
1190.00057760.2611.610209204_atLMO4LIM domain only 4
1200.00058230.2611.408227847_atEPM2AIP1EPM2A (laforin) interacting protein 1
1210.00058290.2611.539208663_s_atTTC3tetratricopeptide repeat domain 3
1220.00058960.2611.200230578_atZNF471zinc finger protein 471
1240.00061420.2611.892202196_s_atDKK3dickkopf homologue 3 (Xenopus laevis)
1250.00062080.2611.483239768_x_atNot available
1270.00063050.2612.216204105_s_atNRCAMneuronal cell adhesion molecule
1280.00063190.2611.308212970_atAPBB2amyloid beta (A4) precursor protein-binding, family B, member 2
1320.00063880.2611.556232063_x_atFARSBphenylalanyl-tRNA synthetase, beta subunit
1330.00064870.2612.005220253_s_atLRP12low density lipoprotein-related protein 12
1340.00064880.2611.265226843_s_atPAPD5PAP associated domain containing 5
1350.00065010.2611.563211698_atEID1EP300 interacting inhibitor of differentiation 1
1360.00065110.2611.715213425_atWNT5Awingless-type MMTV integration site family, member 5A
1390.00069070.2661.468208661_s_atTTC3tetratricopeptide repeat domain 3
1400.00069720.2661.686229530_atGUCY1A3guanylate cyclase 1, soluble, alpha 3
1420.00069920.2661.645219174_atIFT74intraflagellar transport 74 homologue (Chlamydomonas)
1430.00070200.2662.073209289_atNFIBnuclear factor I/B
1440.00070350.2661.166210742_atCDC14ACDC14 cell division cycle 14 homologue A (S. cerevisiae)
1450.00071010.2661.438209737_atMAGI2membrane associated guanylate kinase, WW and PDZ domain containing 2
1460.00071160.2661.931204463_s_atEDNRAendothelin receptor type A
1500.00073830.2661.262200702_s_atDDX24DEAD (Asp-Glu-Ala-Asp) box polypeptide 24
1510.00073940.2661.523223463_atRAB23RAB23, member RAS oncogene family
1520.00074060.2661.300225565_atFAM119Afamily with sequence similarity 119, member A
1540.00079030.2801.611218788_s_atSMYD3SET and MYND domain containing 3
1550.00079430.2801.161241002_atNot available
1560.00080430.2821.567235368_atADAMTS5ADAM metallopeptidase with thrombospondin type 1 motif, 5 (aggrecanase-2)
1570.00080900.2824.220211756_atPTHLHparathyroid hormone-like hormone
1580.00081570.2821.288212746_s_atCEP170centrosomal protein 170kDa
1590.00082510.2823.270226847_atFSTfollistatin
1610.00083250.2821.610205609_atANGPT1angiopoietin 1
1630.00084620.2821.559201810_s_atSH3BP5SH3-domain binding protein 5 (BTK-associated)
1640.00085930.2821.4121556543_atZCCHC7zinc finger, CCHC domain containing 7
1670.00086490.2821.501230424_atC5orf13chromosome 5 open reading frame 13
1680.00086610.2821.278210438_x_atTROVE2TROVE domain family, member 2
1690.00087640.2841.680205381_atLRRC17leucine rich repeat containing 17
1700.00090090.2842.125209290_s_atNFIBnuclear factor I/B
1710.00090550.2841.745234996_atCALCRLcalcitonin receptor-like
1730.00090870.2842.649230493_atTMEM46transmembrane protein 46
1740.00091100.2843.152231867_atODZ2odz, odd Oz/ten-m homologue 2 (Drosophila)
1750.00091920.2841.377225735_atANKRD50ankyrin repeat domain 50
1760.00092120.2841.305219078_atGPATCH2G patch domain containing 2
1780.00092360.2841.507224989_atNot available
1790.00094060.2871.466202150_s_atNEDD9neural precursor cell expressed, developmentally down-regulated 9
1800.00095790.2881.668202133_atWWTR1WW domain containing transcription regulator 1
1810.00096060.2881.435208670_s_atEID1EP300 interacting inhibitor of differentiation 1
1820.00096660.2881.911204686_atIRS1insulin receptor substrate 1
1830.00096700.2881.434202132_atWWTR1WW domain containing transcription regulator 1
1840.00096790.2881.416225961_atKLHDC5kelch domain containing 5
1860.00098920.2891.329243305_atNot available
1880.00099830.2891.447242300_atUBBubiquitin B
Upregulated in N+
RankParametric P valueFDRFold-changeProbe setGene symbolDescription
20.00000210.0420.346220013_atABHD9abhydrolase domain containing 9
60.00000850.0770.635223540_atPVRL4poliovirus receptor-related 4
140.00003300.1250.766239377_atMGC11102hypothetical protein MGC11102
270.00007030.1410.760204188_s_atRARGretinoic acid receptor, gamma
330.00008760.1450.767208104_s_atTSC22D4TSC22 domain family, member 4
350.00009590.1480.738239825_atATF6activating transcription factor 6
450.00014930.1810.785212147_atSMG5Smg-5 homologue, nonsense mediated mRNA decay factor (C. elegans)
480.00017210.1960.749218928_s_atSLC37A1solute carrier family 37 (glycerol-3-phosphate transporter), member 1
490.00017750.1980.646205204_atNMBneuromedin B
560.00020630.2010.620238804_atNot available
570.00022090.2110.702209679_s_atLOC57228small trans-membrane and glycosylated protein
590.00023950.2110.760210678_s_atAGPAT21-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)
610.00024210.2110.837215106_atTTC22tetratricopeptide repeat domain 22
730.00029650.2220.821235234_atFLJ36874FLJ36874 protein
750.00030830.2250.205213240_s_atKRT4keratin 4
780.00032060.2250.755237063_atNot available
790.00033000.2280.847220335_x_atCES3carboxylesterase 3 (brain)
800.00033460.2290.805239230_atHES5hairy and enhancer of split 5 (Drosophila)
810.00034640.2340.636209261_s_atNR2F6nuclear receptor subfamily 2, group F, member 6
830.00037200.2450.6151557944_s_atCTNND1catenin (cadherin-associated protein), delta 1
890.00041720.2490.707229493_atHOXD9homeobox D9
900.00042150.2490.851236676_atNUDCD3NudC domain containing 3
910.00042550.2490.756206949_s_atRUSC1RUN and SH3 domain containing 1
920.00042860.2490.648235871_atLIPHlipase, member H
930.00043870.2490.666205977_s_atEPHA1EPH receptor A1
970.00046070.2490.7571555784_s_atIRAK1interleukin-1 receptor-associated kinase 1
990.00047240.2490.744220599_s_atCARD14caspase recruitment domain family, member 14
1040.00048560.2490.838207566_atMR1major histocompatibility complex, class I-related
1070.00049280.2490.8571563147_atNot available
1090.00049860.2490.662211240_x_atCTNND1catenin (cadherin-associated protein), delta 1
1120.00052830.2510.784231788_atGPR92G protein-coupled receptor 92
1130.00052860.2510.790236725_atWWC1WW and C2 domain containing 1
1140.00052910.2510.799232608_x_atCARD14caspase recruitment domain family, member 14
1170.00054080.2530.5541553611_s_atFLJ33790hypothetical protein FLJ33790
1230.00060070.2610.828218749_s_atSLC24A6solute carrier family 24 (sodium/potassium/calcium exchanger), member 6
1260.00062250.2610.422206595_atCST6cystatin E/M
1290.00063430.2610.7781553072_atBNIPLBCL2/adenovirus E1B 19kD interacting protein like
1300.00063540.2610.678222809_x_atC14orf65chromosome 14 open reading frame 65
1310.00063840.2610.712207525_s_atGIPC1GIPC PDZ domain containing family, member 1
1370.00065340.2610.828231248_atCST6cystatin E/M
1380.00067870.2660.655220289_s_atAIM1Labsent in melanoma 1-like
1410.00069730.2660.8131487_atESRRAestrogen-related receptor alpha
1470.00072080.2660.701203918_atPCDH1protocadherin 1
1480.00072900.2660.776204827_s_atCCNFcyclin F
1490.00073100.2660.626216010_x_atFUT3fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)
1530.00077810.2780.845220962_s_atPADI1peptidyl arginine deiminase, type I
1600.00083250.2820.678230252_atGPR92G protein-coupled receptor 92
1620.00084400.2820.748236616_atNot available
1650.00086160.2820.695235988_atGPR110G protein-coupled receptor 110
1660.00086450.2820.6451552685_a_atGRHL1grainyhead-like 1 (Drosophila)
1720.00090640.2840.280203757_s_atCEACAM6carcinoembryonic antigen-related cell adhesion molecule 6 (non-specific cross reacting antigen)
1770.00092270.2840.724235095_atCCDC64Bcoiled-coil domain containing 64B
1850.00098260.2890.873233154_atAFF3AF4/FMR2 family, member 3
1870.00099630.2890.696226638_atARHGAP23Rho GTPase activating protein 23