Table 2

A list of positive CGI clones isolated by DMH

CpG island cloneaInsert size (kb)GenBank matchAccession number
HBC-17b0.75
HBC-19b0.90 PAX7 AL021528
HBC-24b1.10IMAGE:2518953 5′ mRNA sequenceAI928953
HBC-25b0.70
HBC-27b0.70
HBC-330.85
HBC-340.95IMAGE:1113203 3′ mRNA sequenceAA604922
HBC-351.00
HBC-360.70
HBC-371.00PAC 163M9AL021920
HBC-380.50CGI 40c10Z58446
HBC-390.60EST185442AA313564
HBC-400.95
HBC-410.60CGI 29h6Z58110
HBC-420.50CGI 13f7Z56764
HBC-430.80Genomic clone NH0444B04AC007392
HBC-441.20
HBC-450.50PAC 29K1Z98745
HBC-460.65IMAGE:2177671 3′ mRNA sequenceAI500696
HBC-470.70
HBC-481.50BAC clone RG300E22AC004774
HBC-490.50CGI 40c10Z58447
HBC-500.45
HBC-510.70 COL9A1 (alt exon1) M32133
HBC-520.60IMAGE:2092259 3′ mRNA sequenceAI381934
HBC-530.80Genomic clone NH0444B04AC007392
HBC-540.85
HBC-550.80 CAVEOLIN-1 (exon2) AF095592
HBC-560.60
HBC-570.90 GATA-3 (exon1) X55122
  • a HBC clones have been sequenced, and these data and other information are available to the research community on our Web site: www.missouri.edu/∼hypermet.

  • b The clone was hypermethylated in a study of breast cancer cell lines (10) and in primary breast tumors in this study.