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Biology of Human Tumors

Development and Clinical Validation of an In Situ Biopsy-Based Multimarker Assay for Risk Stratification in Prostate Cancer

Peter Blume-Jensen, David M. Berman, David L. Rimm, Michail Shipitsin, Mathew Putzi, Thomas P. Nifong, Clayton Small, Sibgat Choudhury, Teresa Capela, Louis Coupal, Christina Ernst, Aeron Hurley, Alex Kaprelyants, Hua Chang, Eldar Giladi, Julie Nardone, James Dunyak, Massimo Loda, Eric A. Klein, Cristina Magi-Galluzzi, Mathieu Latour, Jonathan I. Epstein, Philip Kantoff and Fred Saad
Peter Blume-Jensen
1Metamark Genetics Inc., Cambridge, Massachusetts.
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David M. Berman
2Department of Pathology and Molecular Medicine, Queen's University, Kingston, Ontario, Canada.
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David L. Rimm
3Department of Pathology, Yale University Medical School, New Haven, Connecticut.
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Michail Shipitsin
1Metamark Genetics Inc., Cambridge, Massachusetts.
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Mathew Putzi
4Urology Austin, Austin, Texas.
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Thomas P. Nifong
1Metamark Genetics Inc., Cambridge, Massachusetts.
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Clayton Small
1Metamark Genetics Inc., Cambridge, Massachusetts.
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Sibgat Choudhury
1Metamark Genetics Inc., Cambridge, Massachusetts.
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Teresa Capela
1Metamark Genetics Inc., Cambridge, Massachusetts.
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Louis Coupal
5Impacts Inc., Montreal, Quebec, Canada.
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Christina Ernst
1Metamark Genetics Inc., Cambridge, Massachusetts.
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Aeron Hurley
1Metamark Genetics Inc., Cambridge, Massachusetts.
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Alex Kaprelyants
1Metamark Genetics Inc., Cambridge, Massachusetts.
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Hua Chang
1Metamark Genetics Inc., Cambridge, Massachusetts.
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Eldar Giladi
1Metamark Genetics Inc., Cambridge, Massachusetts.
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Julie Nardone
1Metamark Genetics Inc., Cambridge, Massachusetts.
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James Dunyak
1Metamark Genetics Inc., Cambridge, Massachusetts.
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Massimo Loda
6Dana-Farber Cancer Institute, Boston, Massachusetts.
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Eric A. Klein
7Glickman Urological and Kidney Institute, Cleveland Clinic, Cleveland, Ohio.
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Cristina Magi-Galluzzi
8Department of Anatomic Pathology, Cleveland Clinic, Cleveland, Ohio.
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Mathieu Latour
9Centre Hospitalier de l'Université de Montréal, Montreal, Quebec, Canada.
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Jonathan I. Epstein
10Department of Pathology, Urology and Oncology, Johns Hopkins Hospital, Baltimore, Maryland.
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Philip Kantoff
6Dana-Farber Cancer Institute, Boston, Massachusetts.
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Fred Saad
9Centre Hospitalier de l'Université de Montréal, Montreal, Quebec, Canada.
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  • For correspondence: fred.saad@umontreal.ca
DOI: 10.1158/1078-0432.CCR-14-2603 Published June 2015
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Abstract

Purpose: Prostate cancer aggressiveness and appropriate therapy are routinely determined following biopsy sampling. Current clinical and pathologic parameters are insufficient for accurate risk prediction leading primarily to overtreatment and also missed opportunities for curative therapy.

Experimental Design: An 8-biomarker proteomic assay for intact tissue biopsies predictive of prostate pathology was defined in a study of 381 patient biopsies with matched prostatectomy specimens. A second blinded study of 276 cases validated this assay's ability to distinguish “favorable” versus “nonfavorable” pathology independently and relative to current risk classification systems National Comprehensive Cancer Network (NCCN and D'Amico).

Results: A favorable biomarker risk score of ≤0.33, and a nonfavorable risk score of >0.80 (possible range between 0 and 1) were defined on “false-negative” and “false-positive” rates of 10% and 5%, respectively. At a risk score ≤0.33, predictive values for favorable pathology in very low-risk and low-risk NCCN and low-risk D'Amico groups were 95%, 81.5%, and 87.2%, respectively, higher than for these current risk classification groups themselves (80.3%, 63.8%, and 70.6%, respectively). The predictive value for nonfavorable pathology was 76.9% at biomarker risk scores >0.8 across all risk groups. Increased biomarker risk scores correlated with decreased frequency of favorable cases across all risk groups. The validation study met its two coprimary endpoints, separating favorable from nonfavorable pathology (AUC, 0.68; P < 0.0001; OR, 20.9) and GS-6 versus non–GS-6 pathology (AUC, 0.65; P < 0.0001; OR, 12.95).

Conclusions: The 8-biomarker assay provided individualized, independent prognostic information relative to current risk stratification systems, and may improve the precision of clinical decision making following prostate biopsy. Clin Cancer Res; 21(11); 2591–600. ©2015 AACR.

Footnotes

  • Note: Supplementary data for this article are available at Clinical Cancer Research Online (http://clincancerres.aacrjournals.org/).

  • Received October 8, 2014.
  • Revision received February 11, 2015.
  • Accepted February 19, 2015.
  • ©2015 American Association for Cancer Research.
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Clinical Cancer Research: 21 (11)
June 2015
Volume 21, Issue 11
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Development and Clinical Validation of an In Situ Biopsy-Based Multimarker Assay for Risk Stratification in Prostate Cancer
Peter Blume-Jensen, David M. Berman, David L. Rimm, Michail Shipitsin, Mathew Putzi, Thomas P. Nifong, Clayton Small, Sibgat Choudhury, Teresa Capela, Louis Coupal, Christina Ernst, Aeron Hurley, Alex Kaprelyants, Hua Chang, Eldar Giladi, Julie Nardone, James Dunyak, Massimo Loda, Eric A. Klein, Cristina Magi-Galluzzi, Mathieu Latour, Jonathan I. Epstein, Philip Kantoff and Fred Saad
Clin Cancer Res June 1 2015 (21) (11) 2591-2600; DOI: 10.1158/1078-0432.CCR-14-2603

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Development and Clinical Validation of an In Situ Biopsy-Based Multimarker Assay for Risk Stratification in Prostate Cancer
Peter Blume-Jensen, David M. Berman, David L. Rimm, Michail Shipitsin, Mathew Putzi, Thomas P. Nifong, Clayton Small, Sibgat Choudhury, Teresa Capela, Louis Coupal, Christina Ernst, Aeron Hurley, Alex Kaprelyants, Hua Chang, Eldar Giladi, Julie Nardone, James Dunyak, Massimo Loda, Eric A. Klein, Cristina Magi-Galluzzi, Mathieu Latour, Jonathan I. Epstein, Philip Kantoff and Fred Saad
Clin Cancer Res June 1 2015 (21) (11) 2591-2600; DOI: 10.1158/1078-0432.CCR-14-2603
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