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Research Article

Network for biomarker immunoprofiling for cancer immunotherapy: Cancer Immune Monitoring and Analysis Centers and Cancer Immunologic Data Commons (CIMAC-CIDC)

Helen X. Chen, Minkyung Song, Holden T Maecker, Sacha Gnjatic, David Patton, J. Jack Lee, Stacey J. Adam, Radim Moravec, X. Shirley Liu, Ethan Cerami, James Lindsay, F. Stephen Hodi, Catherine Wu, Ignacio I. Wistuba, Gheath Al-Atrash, Chantale Bernatchez, Sean C Bendall, Stephen M. Hewitt, Elad Sharon, Howard Streicher, Rebecca A. Enos, Melissa D Bowman, Valerie M Tatard-Leitman, Beatriz Sanchez-Espiridion, Srinika Ranasinghe, Mina Pichavant, Diane M Del Valle, Joyce Yu, Sylvie Janssens, Jenny Peterson-Klaus, Cathy Rowe, Gerold Bongers, Robert R Jenq, Chia-Chi Chang, Jeffrey S. Abrams, Margaret Mooney, James H. Doroshow, Lyndsay N. Harris and Magdalena Thurin
Helen X. Chen
1Cancer Therapy Evaluation Program, National Cancer Institute
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Minkyung Song
2Division of Cancer Treatment and Diagnosis, National Cancer Institute, Bethesda, MD, USA.
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Holden T Maecker
3Immunity, Transplantation, Infection, Stanford University Medical School
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Sacha Gnjatic
4Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai
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David Patton
5National Cancer Institute
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J. Jack Lee
6Department of Biostatistics, The University of Texas MD Anderson Cancer Center
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Stacey J. Adam
7Cancer, Research Partnerships, Foundation for the National Institutes of Health
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Radim Moravec
8Cancer Diagnosis Program, Division of Cancer Treatment and Diagnosis, National Cancer Institute
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X. Shirley Liu
9Dana-Farber Cancer Institute, Harvard Medical School
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Ethan Cerami
10Biostatistics and Computational Biology, Dana–Farber Cancer Institute
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James Lindsay
11Data Science, Dana-Farber Cancer Institute
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F. Stephen Hodi
12Medical Oncology, Dana-Farber Cancer Institute
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Catherine Wu
13Department of Medical Oncology, Dana-Farber Cancer Institute
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Ignacio I. Wistuba
14Department of Translational Molecular Pathology, The University of Texas MD Anderson Cancer Center
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Gheath Al-Atrash
15Stem Cell Transplantation and Cellular Therapy, The University of Texas MD Anderson Cancer Center
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Chantale Bernatchez
16Melanoma Medical Oncology, University of Texas MD Anderson Cancer Center
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Sean C Bendall
17Department of Pathology, Stanford University
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Stephen M. Hewitt
18Laboratory of Pathology, National Cancer Institute
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Elad Sharon
1Cancer Therapy Evaluation Program, National Cancer Institute
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Howard Streicher
19CTEP, National Cancer Institute
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Rebecca A. Enos
20The Emmes Company, LLC, The Emmes Company, LLC
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Melissa D Bowman
21Information Specialists and Project Managers, The Emmes Company, LLC
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Valerie M Tatard-Leitman
22CTIMS, The Emmes Company, LLC
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Beatriz Sanchez-Espiridion
23Epidemiology, University of Texas MD Anderson Cancer Center
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Srinika Ranasinghe
24Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA
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Mina Pichavant
25Stanford University, Stanford Institute for Immunity, Transplantation and Infection, Stanford, CA, USA.
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Diane M Del Valle
26Human Immune Monitoring Center, Icahn School of Medicine at Mount Sinai
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Joyce Yu
27Department of Data Science, Dana-Farber Cancer Institute, Harvard T.H. Chan School of Public Health
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Sylvie Janssens
28n.a., The Emmes Company, LLC
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Jenny Peterson-Klaus
29Research Partnerships, Foundation for the National Institutes of Health
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Cathy Rowe
30Center for Biomedical Informatics and Information Technology, National Cancer Institute
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Gerold Bongers
31Oncological Sciences, Icahn School of Medicine at Mount Sinai
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Robert R Jenq
32Stem Cell Transplantation and Cellular Therapy and Genomic Medicine, University of Texas MD Anderson Cancer Center
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Chia-Chi Chang
33Molecular and Cellular Oncology, University of Texas MD Anderson Cancer Center
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Jeffrey S. Abrams
34DCTD, National Cancer Institute
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Margaret Mooney
35Cancer Therapy Evaluation Program, DCTD, National Cancer Institute
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James H. Doroshow
36Division of Cancer Treatment and Diagnosis, National Cancer Institute
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Lyndsay N. Harris
37Cancer Diagnsosi Program, National Cancer Institute
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Magdalena Thurin
38Cancer Diagnosis Program, DCTD, Cancer Diagnosis Program, DCTD, National Cancer Institute
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  • For correspondence: thurinm@mail.nih.gov
DOI: 10.1158/1078-0432.CCR-20-3241
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Abstract

Immunoprofiling to identify biomarkers and integration with clinical trials outcome are critical to improve immunotherapy approaches for cancer patients. However, the translational potential of individual studies is often limited by small sample size of trials and the complexity of immuno-oncology biomarkers. Variability in assays further limits comparison and interpretation of data across studies and laboratories. To enable a systematic approach to biomarker identification and correlation with clinical outcome across trials, the Cancer Immune Monitoring and Analysis Centers and Cancer Immunologic Data Commons (CIMAC-CIDC) Network was established through support of the Cancer MoonshotSM Initiative of the National Cancer Institute and the Partnership for Accelerating Cancer Therapies (PACT) with industry partners via the Foundation for the National Institutes of Health. The CIMAC-CIDC Network is composed of four academic centers (CIMACs) with multidisciplinary expertise in the field of cancer immunotherapy that provide validated and harmonized assays for immune profiling. A data coordinating center (CIDC) provides the computational expertise and resources for biomarker data storage and analysis platforms for correlation with clinical data. This overview highlights strategies for assay harmonization to enable cross-trial and cross-site data analysis and describes key elements for establishing a network to enhance immuno-oncology biomarker development. These include an operational infrastructure; validation and harmonization of core immunoprofiling assays; platforms for data ingestion and integration; and access to specimens from clinical trials. Published in the same volume are reports of harmonization for core analyses: whole exome sequencing, RNA sequencing, cytometry by time of flight, and immunohistochemistry/immunofluorescence.

  • Received August 17, 2020.
  • Revision received November 9, 2020.
  • Accepted December 23, 2020.
  • Copyright ©2021, American Association for Cancer Research.
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This OnlineFirst version was published on January 8, 2021
doi: 10.1158/1078-0432.CCR-20-3241

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Network for biomarker immunoprofiling for cancer immunotherapy: Cancer Immune Monitoring and Analysis Centers and Cancer Immunologic Data Commons (CIMAC-CIDC)
Helen X. Chen, Minkyung Song, Holden T Maecker, Sacha Gnjatic, David Patton, J. Jack Lee, Stacey J. Adam, Radim Moravec, X. Shirley Liu, Ethan Cerami, James Lindsay, F. Stephen Hodi, Catherine Wu, Ignacio I. Wistuba, Gheath Al-Atrash, Chantale Bernatchez, Sean C Bendall, Stephen M. Hewitt, Elad Sharon, Howard Streicher, Rebecca A. Enos, Melissa D Bowman, Valerie M Tatard-Leitman, Beatriz Sanchez-Espiridion, Srinika Ranasinghe, Mina Pichavant, Diane M Del Valle, Joyce Yu, Sylvie Janssens, Jenny Peterson-Klaus, Cathy Rowe, Gerold Bongers, Robert R Jenq, Chia-Chi Chang, Jeffrey S. Abrams, Margaret Mooney, James H. Doroshow, Lyndsay N. Harris and Magdalena Thurin
Clin Cancer Res January 8 2021 DOI: 10.1158/1078-0432.CCR-20-3241

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Network for biomarker immunoprofiling for cancer immunotherapy: Cancer Immune Monitoring and Analysis Centers and Cancer Immunologic Data Commons (CIMAC-CIDC)
Helen X. Chen, Minkyung Song, Holden T Maecker, Sacha Gnjatic, David Patton, J. Jack Lee, Stacey J. Adam, Radim Moravec, X. Shirley Liu, Ethan Cerami, James Lindsay, F. Stephen Hodi, Catherine Wu, Ignacio I. Wistuba, Gheath Al-Atrash, Chantale Bernatchez, Sean C Bendall, Stephen M. Hewitt, Elad Sharon, Howard Streicher, Rebecca A. Enos, Melissa D Bowman, Valerie M Tatard-Leitman, Beatriz Sanchez-Espiridion, Srinika Ranasinghe, Mina Pichavant, Diane M Del Valle, Joyce Yu, Sylvie Janssens, Jenny Peterson-Klaus, Cathy Rowe, Gerold Bongers, Robert R Jenq, Chia-Chi Chang, Jeffrey S. Abrams, Margaret Mooney, James H. Doroshow, Lyndsay N. Harris and Magdalena Thurin
Clin Cancer Res January 8 2021 DOI: 10.1158/1078-0432.CCR-20-3241
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