Table 1.

Genomic characterization of MITF/TFE TRCC

Sample nameSample originFusion productMate numberTFE3 fusion site (amino acid)Comment
RCC-T25MDACCNONO–TFE338295–296Previously identified fusion
TFE3–NONO21295–296
RCC-T31MDACCPRCC–TFE36178–179Previously identified fusion
RCC-T32MDACCPRCC–TFE37295–296Previously identified fusion
TFE3–PRCC3295–296
RCC-T33MDACCPRCC–TFE34260–261Previously identified fusion
RCC-T34MDACCASPSCR1–TFE32295–296Previously identified fusion
RCC-T35MDACCSFPQ–TFE326260–261Previously identified fusion
TFE3–SFPQ26260–261
RCC-T1MDACCTFE3–LUC7L3977–78Fusion identified by RNA-Seq
LUC7L3–TFE3177–78
TFE3–SFPQ16239–40Fusion identified by RNA-Seq
K345601ATCGASFPQ–TFE312339–40
K475601ATCGASFPQ–TFE329639–40Fusion identified by RNA-Seq
K475801TCGASFPQ–TFE3539–40Fusion identified by RNA-Seq
K554601TCGASFPQ–TFE389295–296Fusion identified by RNA-Seq
K570501TCGASFPQ–TFE32295–296Fusion identified by RNA-Seq
K568101ATCGAKHSRP–TFE319178–179Fusion identified by RNA-Seq
K331301ATCGATFEB–KHDRBS2485397–398/TFEBFusion identified by RNA-Seq