Table 2

Genes that were commonly regulated for both ER+ and ERBB2+ molecular subtypes in the normal/DCIS transition

Probe_IDGene nameGene symbolUniGene
Down
 204294_ataminomethyltransferase(glycine cleavage system protein T) AMT Hs.12
 201012_at annexin A1 ANXA1 Hs.78225
 203324_s_at caveolin 2 CAV2 Hs.139851
 200985_s_atCD59 antigen p18–20(antigen identified by monoclonal antibodies 16.3A5, EJ16, EJ30, EL32 and G344) CD59 Hs.278573
 221556_atCDC14 cell division cycle 14 homolog B(Saccharomyces cerevisiae) CDC14B Hs.22116
 202259_s_at hypothetical protein from BCRA2 region CG005 Hs.23518
 203477_at collagen, type XV, α1 COL15A1 Hs.83164
 201289_at cysteine-rich, angiogenic inducer, 61 CYR61 Hs.8867
 201581_at hypothetical protein DJ971N18.2 DJ971N18.2 Hs.169358
 207761_s_at DKFZP586A0522 protein DKFZP586A0522 Hs.288771
 203881_s_atdystrophin(muscular dystrophy, Duchenne and Becker types) DMD Hs.169470
 212730_at desmuslin DMN Hs.10587
 208370_s_at Down syndrome critical region gene 1 DSCR1 Hs.184222
 201540_at four and a half LIM domains 1 FHL1 Hs.239069
 218804_at hypothetical protein FLJ10261 FLJ10261 Hs.26176
 218823_s_at hypothetical protein FLJ20038 FLJ20038 Hs.72071
 203706_s_atfrizzled homolog 7(Drosophila) FZD7 Hs.173859
 209292_at inhibitor of DNA binding 4, dominant negative helix-loop-helix protein ID4 Hs.34853
 208966_x_at interferon, gamma-inducible protein 16 IFI16 Hs.155530
 204773_atinterleukin 11 receptor IL11RA Hs.64310
 206766_atintegrin,α10 ITGA10 Hs.158237
 201656_atintegrin,α6 ITGA6 Hs.227730
 201466_s_atv-jun sarcoma virus 17 oncogene homologue(avian) JUN Hs.78465
 209351_atkeratin 14(epidermolysis bullosa simplex, Dowling-Meara, Koebner) KRT14 Hs.355214
 202350_s_at matrilin 2 MATN2 Hs.19368
 209583_s_at antigen identified by monoclonal antibody MRC OX-2 MOX2 Hs.79015
 202431_s_atv-myc myelocytomatosis viral oncogene homolog(avian) MYC Hs.79070
 209272_atNGFI-A binding protein 1(EGR1 binding protein 1) NAB1 Hs.107474
 209289_at nuclear factor I/B NFIB Hs.33287
 211671_s_atnuclear receptor subfamily 3, group C, member 1(glucocorticoid receptor) NR3C1 Hs.75772
 218589_at purinergic receptor P2Y, G-protein coupled, 5 P2RY5 Hs.123464
 203131_at platelet-derived growth factor receptor, α polypeptide PDGFRA Hs.74615
 203097_s_atPDZ domain containing guanine nucleotide exchange factor(GEF)1 PDZGEF1 Hs.373588
 218319_atpellino homolog 1(Drosophila) PELI1 Hs.7886
 207943_x_at pleiomorphic adenoma gene-like 1 PLAGL1 Hs.75825
 201578_at podocalyxin-like PODXL Hs.16426
 209147_s_at phosphatidic acid phosphatase type 2A PPAP2A Hs.406043
 215707_s_atprion protein(p27–30) (Creutzfeld-Jakob disease, Gerstmann-Strausler-Scheinker syndrome, fatal familial insomnia) PRNP Hs.74621
 221523_s_at Ras-related GTP binding D RRAGD Hs.238679
 200937_s_at ribosomal protein L5 RPL5 Hs.180946
 202037_s_at secreted frizzled-related protein 1 SFRP1 Hs.7306
 200795_atSPARC-like 1(mast9, hevin) SPARCL1 Hs.75445
 204955_at sushi-repeat-containing protein, X-linked SRPX Hs.15154
 216037_x_attranscription factor 7-like 2(T-cell specific, HMG-box) TCF7L2 Hs.348412
 208944_attransforming growth factorreceptor II(70/80 kDa) TGFBR2 Hs.82028
 204731_attransforming growth factorreceptor III(betaglycan, 300 kDa) TGFBR3 Hs.342874
 213900_at Friedreich ataxia region gene X123 X123 Hs.77889
UP
 204170_s_at CDC28 protein kinase regulatory subunit 2 CKS2 Hs.83758
 212057_at KIAA0182 protein KIAA0182 Hs.75909
 210519_s_atNAD(P)H dehydrogenase, quinone 1 NQO1 Hs.406515
 208874_x_atprotein phosphatase 2A, regulatory subunit B′ (PR 53) PPP2R4 Hs.400740
 208734_x_at RAB2, member RAS oncogene family RAB2 Hs.78305
 200832_s_atstearoyl-CoA desaturase-9-desaturase) SCD Hs.119597
 209218_at squalene epoxidase SQLE Hs.71465
 201689_s_at tumor protein D52 TPD52 Hs.2384
 36936_at tissue specific transplantation antigen P35B TSTA3 Hs.404119
  • NOTE. See Fig. 4B<$REFLINK> . “Down” indicates down-regulation in the normal/DCIS transition.

  • Abbreviation: ID, identification.