Table 1

Candidate selection from peptides derived from RNF43 based on predicted binding affinities to HLA-A*0201

Start positionAA sequence (9mers)Binding affinityStart positionAA sequence (10mers)Binding affinity
BIMASSYFPEITHIBIMASSYFPEITHI
60KLNLTLEGV2742781KLMQSHPLYL152123
8QLAALWPWL19924357YLLGPSRSAV118327
82LMQSHPLYL14421202LMTVVGTIFV46919
358LLGPSRSAV11825290CLHEFHRNCV28523
11ALWPWLLMA9424500SLSSDFDPLV26423
15WLLMATLQA84198QLAALWPWLL16022
200WILMTVVGT402111ALWPWLLMAT14224
171KLMEFVYKN34227LQLAALWPWL12715
62NLTLEGVFA2715726WLCLTPRQPL9820
156GLTWPVVLI2325302WLHQHRTCPL9820
  • Note. Table 1<$REFLINK> (HLA-A*0201) shows the predicted peptides binding to HLA-A*0201 in the order of predicted binding affinities shown as binding scores. Predicted 9mer-peptides are shown in the left half, and predicted 10mer-peptides are shown in the right half of the table. The prediction of the binding affinities was performed with the software described in Materials and Methods.