Candidate selection from peptides derived from RNF43 based on predicted binding affinities to HLA-A*0201
Start position | AA sequence (9mers) | Binding affinity | Start position | AA sequence (10mers) | Binding affinity | ||||
---|---|---|---|---|---|---|---|---|---|
BIMAS | SYFPEITHI | BIMAS | SYFPEITHI | ||||||
60 | KLNLTLEGV | 274 | 27 | 81 | KLMQSHPLYL | 1521 | 23 | ||
8 | QLAALWPWL | 199 | 24 | 357 | YLLGPSRSAV | 1183 | 27 | ||
82 | LMQSHPLYL | 144 | 21 | 202 | LMTVVGTIFV | 469 | 19 | ||
358 | LLGPSRSAV | 118 | 25 | 290 | CLHEFHRNCV | 285 | 23 | ||
11 | ALWPWLLMA | 94 | 24 | 500 | SLSSDFDPLV | 264 | 23 | ||
15 | WLLMATLQA | 84 | 19 | 8 | QLAALWPWLL | 160 | 22 | ||
200 | WILMTVVGT | 40 | 21 | 11 | ALWPWLLMAT | 142 | 24 | ||
171 | KLMEFVYKN | 34 | 22 | 7 | LQLAALWPWL | 127 | 15 | ||
62 | NLTLEGVFA | 27 | 15 | 726 | WLCLTPRQPL | 98 | 20 | ||
156 | GLTWPVVLI | 23 | 25 | 302 | WLHQHRTCPL | 98 | 20 |
Note. Table 1<$REFLINK> (HLA-A*0201) shows the predicted peptides binding to HLA-A*0201 in the order of predicted binding affinities shown as binding scores. Predicted 9mer-peptides are shown in the left half, and predicted 10mer-peptides are shown in the right half of the table. The prediction of the binding affinities was performed with the software described in Materials and Methods.