Table 2

Candidate selection from peptides derived from RNF43 based on predicted binding affinities to HLA-A*2402

Start positionAA sequence (9mers)Binding affinityStart positionAA sequence (10mers)Binding affinity
BIMASSYFPEITHIBIMASSYFPEITHI
331SYQEPGRRL36022449SYCTERSGYL20020
350HYHLPAAYL20019350HYHLPAAYLL20021
639LFNLQKSSL3016718CYSNSQPVWL20021
24GFGRTGLVL2016209IFVIILASVL3616
247RYQASCRQA1510313VFNITEGDSF1518
397RAPGEQQRL1412496TFCSSLSSDF1217
114RAPRPCLSL121281KLMQSHPLYL1212
368RPPRPGPFL121254KMDPTGKLNL912
45KAVIRVIPL1213683HYTPSVAYPW811
721NSQPVWLCL1012282GQELRVISCL411
  • Note. Table 2<$REFLINK> (HLA-A*2402) shows the predicted peptides binding to HLA-A*2402 in the order of predicted binding affinities shown as binding scores. Predicted 9mer-peptides are shown in the left half, and predicted 10mer-peptides are shown in the right half of the table. The prediction of the binding affinities was performed with the software described in Materials and Methods.