Specific primers for HOX genes
Gene | Primers | Annealing temperature (°C) | Size (bp) | Intron | ||
---|---|---|---|---|---|---|
Sense | Antisense | |||||
HOXA1 | ATGAACTCCTTCCTGGAATA | CGTACTCTCCAACTTTCC | 48 | 655 | + | |
HOXA2 | ACAGCGAAGGGAAATGTAAAAGC | GGGCCCCAGAGACGCTAA | 54 | 102 | − | |
HOXA3 | TGCAAAAAGCGACCTACTACGA | CGTCGGCGCCCAAAG | 51 | 126 | − | |
HOXA4 | TGCATGCGAGCCACGTCCT | TTGACCTGGCGCTCAGACAA | 52 | 391 | + | |
HOXA5 | TGCGCAAGCTGCACATAAGTCATG | TTGAAGTGGAACTCCTTCTCCAGC | 56 | 112 | + | |
HOXA6 | GATGCAGCGCATGAACTCCTGCG | TGGGCTGCGTGGAATTGATGAGC | 58 | 250 | + | |
HOXA7 | CAAAATGCCGAGCCGACTT | TAGCCGGACGCAAAGGG | 58 | 146 | − | |
HOXA9 | CAGCCAACTGGCTTCATGCG | CACTCGTCTTTTGCTCGGTC | 53 | 229 | − | |
HOXA10 | AGAGCAGCAAAGCCTCGCCGGAGAAG | GGACGCTGCGGCTAATCTCTAGGCG | 62 | 198 | + | |
HOXA11 | ACCCGCAAAAAGCGCTGC | GAGCATGCAGGACAGTTG | 50 | 114 | − | |
HOXA13 | GGGAGAAAGAAGCGCGTG | CGTCGTGGCTGATATCCG | 53 | 114 | − | |
HOXB1 | CCTTCTTAGAGTACCCACTCTG | GCATCTCCAGCTGCCTCCTT | 52 | 826 | + | |
HOXB2 | TCCTCCTTTCGAGCAAACCTTCC | AGTGGAATTCCTTCTCCAGTTCC | 52 | 353 | + | |
HOXB3 | AGTACAAGAAGGACCAGAAGGC | TGGAGTGTAAGGCGTTCATG | 50 | 120 | − | |
HOXB4 | GTGCAAAGAGCCCGTCGTCTACC | CGTGTCAGGTAGCGGTTGTAGTG | 56 | 161 | + | |
HOXB5 | GTTCCACTTCAACCGCTACC | TGTCCTTCTTCCACTTCATGC | 52 | 122 | − | |
HOXB6 | GGCGAGGCCGCCAGACATAC | ACTCGGCCTGTTTTTCTTCC | 52 | 236 | − | |
HOXB7 | AGAGTAACTTCCGGATCTA | TCTGCTTCAGCCCTGTCTT | 48 | 274 | + | |
HOXB8 | AGCCTCCTTGTGCAATTG | GTAACAATTGCCCACAGC | 48 | 300 | − | |
HOXB9 | GAGCAGGGCAAAGAGTAA | CTTTCTCCTGACACCTAG | 48 | 250 | − | |
HOXB13 | CTGGAACAGCCAGATGTGTT | TTGGCGAGAACCTTCTTCTC | 50 | 300 | + | |
HOXC4 | GAAGGAGAAGGATCGAGATCG | GACCTGACTTTGGTGTTGGG | 53 | 124 | − | |
HOXC5 | TGGATGACCAAACTGCACATGAGC | CAAGTTGTTGGCGATCTCTATGCG | 54 | 149 | + | |
HOXC6 | CACCTTAGGACATAACACACAGACC | CACTTCATCCGGCGGTTCTGGAACC | 58 | 317 | + | |
HOXC8 | GCAACTCCCTTGAAGTTTCGT | GGGGGAAGTCCAAAGGTAATA | 51 | 172 | − | |
HOXC9 | ACGAGGAAGAAGCGCTGCCCC | GAGAACCCGGGCCACCTCATA | 60 | 133 | − | |
HOXC10 | CTACCGCCTGGAACAACCTGTTGG | ATGGTCTTGCTAATCTCCAGGCG | 54 | 662 | + | |
HOXC11 | GTGTATATCAACAAAGAGAAGCGG | GATAGAGGGTCCAGGAGGTTCCGG | 54 | 322 | − | |
HOXC12 | TAATCTCCTGAATCCCGGGTTT | TGGGTAGGACAGCGAAGGC | 52 | 124 | − | |
HOXC13 | TCCCTAGCTCGCTGCCTCT | GGTTCACGTTGTGCGACAGG | 53 | 478 | − | |
HOXD1 | CGACCCCCATCCCTATCTAGAC | TGGAACTCGGAAGCCAACTAAA | 52 | 115 | − | |
HOXD3 | CATCAGCAAGCAGATCTTCC | AGCGGTTGAAGTGGAATTCC | 50 | 187 | + | |
HOXD4 | TGGATGAAGAAGGTGCACG | ACTTCATCCTCCGGTTCTGG | 50 | 220 | + | |
HOXD8 | GGATACGATAACTTACAGAGAC | TAGAGTTTGGAAGCGACTGT | 48 | 219 | + | |
HOXD9 | GATGAGCAAGGAGAAATGCC | AGTCGCTGGAGAGTTTCTGG | 52 | 140 | − | |
HOXD10 | TACTCCAACCAGCAATTGGC | CTCGGATTCGATTCTCTCGG | 52 | 233 | − | |
HOXD11 | CTTCGACCAGTTCTACGAG | CAGACGGTCTCTGTTCAGT | 50 | 457 | + | |
HOXD12 | AGCAGGCTAAGTTCTATGCG | CAATCTGCTGCTTCGTGTAG | 50 | 380 | + | |
HOXD13 | AGAATGGAGAACGAGTATGCC | CGGTTCTGAAACCAAATGG | 48 | 114 | − |