Table 4

Loci exhibiting high-level amplification or possible homozygous deletion

Clone nameLocusFrequencyGene
Amplifications
RP11-80G241p31.1-1p31.21/47AK5
RP11-148K151q311/39MDM4, LRRN5
RP11-243M131q311/50CNTN2, RBBP5
RP11-118F43q26.3-3q271/49USP13, PEX5R
RP11-125E83q26.3-3q271/49ECE2, PSMD2, EIF4G1, CLCN2, POLR2H, THPO, CHRD
RP11-32K214q11-4q121/49
RP11-210D194q121/42
RP11-175I244q11-4q121/42SCFD2
RP11-98G224q121/41CHIC2
GS-619B44q11-q131/41CLOCK
RP11-80L114q121/40
RP11-15L237p121/49COBL
RP11-14K117p11.211/47EGFR
GS-246M207p128/44EGFR
RP11-34J247p11.2-7p12.14/49LANCL2
RP11-97P117p11.25/49LANCL2
RP11-251I157p11.25/48FKBP9L, MRPS17, GBS
CTD-2074H87q21.2-7q21.32/49CDK6
CTB-54J77q311/42MET
CTD-2039F117q31.31/50MET
CTB-185C187q31.2-q31.311/40ASZ1
CTD-2041G237q31.31-7q31.321/49CTTNBP2
GS-561N112q13-q142/48SAS
RP11-61P112q141/40ARHCL1
RP11-5J612q151/49IFNG, IL26
CTB-136O1412q142/42MDM2
CTB-82N1512q14.3-q152/48MDM2
Deletions
RP11-60J111p36.21/46CAMTA1
RP11-163H63q26.2-3q26.31/50FAD104
RP11-6E94q331/48AADAT
RP11-135M135p14.3-5p15.11/39FBXL7
RP11-31B185q33.21/43SGCD
RP11-224B156p22.31/44
RP11-43B196q262/49LPA
RP11-138J28p211/47PTK2B
GS1-261I18 q tel2/49ZNF16
CTB-41L139 p tel1/49DOCK8
CTB-65D189p2114/49CDKN2A
RP11-33O159p211/34
RP11-85J59p21.31/40
RP11-55P99p212/46
CTD-2170E199p211/50
RP11-235F79p211/44C9orf72
RP11-17O510q22.21/49KCNMA1
CTB-46B1210q231/47PTEN
RP11-129G1710q231/50C10orf59
RP11-162A2310q26.121/40ACADSB, BUB3
RP11-49K1711p14.11/34
RP11-15L811q131/47PC, LRFN4, SYT12
RP11-456I1511q13.41/34PLEKHB1, RAB6A
RP11-42L1811q22.3-11q231/49CUL5, ACAT1, NPAT
RP11-182D614q23-14q241/18GPHN
CTD-2100E1318q11.22/40RIOK3, C18orf8, NPC1, ANKRD29
RP11-4H2422q13.22/19
CTD-2082H4Xq271/41FMR2
  • NOTE: Frequency = no. of observations / no. of cases studied. Gene(s) as located on specified BAC according to July 2003 freeze, UCSC database.