Table 3.

Discriminatory Cancer Genome Anatomy Project pathways between IBC and non-IBC, with permutation P < 0.005

Pathway IDPathway descriptionNo. genesLS permutation PKS permutation P
1KEGG: hsa00071Fatty acid metabolism731e−050.00935
2KEGG: hsa00280Valine, leucine, and isoleucine degradation451e−050.00448
3KEGG: hsa00650Butanoate metabolism339e−050.01313
4KEGG: hsa00062Fatty acid biosynthesis (path 2)160.000320.00126
5KEGG: hsa00053Ascorbate and aldarate metabolism100.000350.02172
6KEGG: hsa00640Propanoate metabolism390.000990.02776
7KEGG: hsa00120Bile acid biosynthesis270.001220.03894
8KEGG: hsa00310Lysine degradation400.002340.12269
9KEGG: hsa03020RNA polymerase300.003490.08216
10BioCarta: h_LairPathwayCells and molecules involved in local acute inflammatory response150.003660.03092
11BioCarta: h_tcytotoxicPathwayT cytotoxic cell surface molecules220.003740.02253
12KEGG: hsa00330Arginine and proline metabolism520.004220.09767
13BioCarta: h_ephA4PathwayEph kinases and ephrins support platelet aggregation90.012160.00446
14KEGG: hsa00920Sulfur metabolism110.013230.00348
15BioCarta: h_PDZsPathwaySynaptic proteins at the synaptic junction230.05450.00039
16KEGG: hsa00910Nitrogen metabolism290.254340.004
  • Abbreviation: KEGG, Kyoto Encyclopedia of Genes and Genomes.