Table 1.

Differentially expressed genes (67 probe sets, corresponding to 57 genes) with P values of <0.05 and fold change >1.5

Common nameGenBank IDFold changePDescription
Genes overexpressed in chromophobe RCC
TMC4BE6455515.9020.000116transmembrane channel-like 4
AP1M2NM_0054985.1960.0119adaptor-related protein complex 1, μ2 subunit
AP1M2AA9109463.5600.0119adaptor-related protein complex 1, μ2 subunit
EPB41L4BNM_0191142.8620.0119erythrocyte membrane protein band 4.1 like 4B
CENTA1AW0506272.4280.0119centaurin, alpha 1
(N.A.)AW3022072.0200.0119transcribed sequences
SH3MD2AI6869571.6360.0119SH3 multiple domains 2
FLJ20171NM_0176975.7860.0127hypothetical protein FLJ20171
CLDN8AL04997711.8900.0129claudin 8
SPINT1NM_0037105.7990.0229serine protease inhibitor, Kunitz type 1
C14orf114NM_0181991.5810.0229chromosome 14 open reading frame 114
MAL2AL11761229.3400.0238mal, T-cell differentiation protein 2
MANBANM_0059081.9290.0238mannosidase, βA, lysosomal
SLC27A1BF0560071.8590.0238solute carrier family 27 (fatty acid transporter), member 1
C14orf87AA1333411.5010.0238chromosome 14 open reading frame 87
(N.A.)AI1919054.7400.024transcribed sequences
LOC196264AA7721721.8090.024hypothetical protein LOC196264
MGC21874AI8625371.7540.024transcriptional adaptor 2 (ADA2 homologue, yeast)-β
TJP3NM_0144281.5730.024tight junction protein 3 (zona occludens 3)
CLDN7NM_0013075.5590.0298GABA(A) receptor-associated protein
CDS1NM_0012634.7560.0298CDP-diacylglycerol synthase 1
TJP3AC0059542.8930.0298tight junction protein 3 (zona occludens 3)
DKFZP566J2046AW0704362.0100.0298hypothetical protein DKFZp566J2046
EPS8L1BC0049071.6500.0298EPS8-like 1
FLJ21918NM_0249391.9450.0333hypothetical protein FLJ21918
LRRC1NM_0182142.2360.0379leucine-rich repeat containing 1
STX3ABE9669222.4880.0383NIH_MGC_72 Homo sapiens cDNA clone IMAGE:3915610
FLJ20171BF00194119.1800.0405hypothetical protein FLJ20171
PVALBNM_0028544.8150.0405parvalbumin
(N.A.)AI0384022.5010.0438Transcribed seq. similar to A57377 transcription factor NFATx
CAPN1NM_0051861.8070.044calpain 1, (μ/l) large subunit
C14orf108NM_0182292.4450.0442chromosome 14 open reading frame 108
CDS1AW3043132.3340.046CDP-diacylglycerol synthase 1
TACSTD1NM_0023543.3070.0461tumor-associated calcium signal transducer 1
CA2M365322.7330.0461carbonic anhydrase II
FLJ36445AA8276492.0990.0461hypothetical protein FLJ36445
SLC16A7AW9757282.2380.047solute carrier family 16, member 7
MDA5NM_0221681.6710.047melanoma differentiation associated protein-5
C14orf108AW1375261.9840.0483chromosome 14 open reading frame 108
C14orf125BF4352861.6820.0485chromosome 14 open reading frame 125
SH3YL1NM_0156772.9160.0493SH3 domain containing, Ysc84-like 1
HOOK2NM_0133122.6290.0493hook homologue 2 (Drosophila)
FLJ34633AA5737752.0720.0494hypothetical protein FLJ34633
Genes overexpressed in oncocytoma
APOENM_000041−3.6230.0119apolipoprotein E
APOEAI358867−2.2780.0129apolipoprotein E
BNIP3U15174−2.1980.0229BCL2/adenovirus E1B 19 kDa-interacting protein 3
CUGBP2U69546−3.6760.0229CUG triplet repeat, RNA binding protein 2
DOCK1AA599017−2.3530.0238dedicator of cytokinesis 1
CUGBP2N36839−3.1750.0238CUG triplet repeat, RNA binding protein 2
APOEN330093.9840.0238apolipoprotein E
ABCC3NM_020037−1.5240.024ATP-binding cassette, sub-family C (CFTR/MRP), member 3
DOCK1NM_0013802.1510.024dedicator of cytokinesis 1
HLA-CM90685−1.6000.0383HLA-G histocompatibility antigen, class I, G
GDI2D139881.7570.0383GDP dissociation inhibitor 2
BNIP3NM_004052−2.0660.0383BCL2/adenovirus E1B 19 kDa-interacting protein 3
FMNL3AW027431−1.5970.0438formin-like 3
TAF15NM_003487−1.5020.0439TAF15 RNA polymerase II, TBP-associated factor
OK/SW-cl.56BC001002−2.0240.046β5-tubulin
FLJ21069NM_024692−1.5080.0485hypothetical protein FLJ21069
HLA-GM90684−1.5290.0485HLA-G histocompatibility antigen, class I, G
HLA-BD83043−1.7760.0485major histocompatibility complex, class I, B
HLA-FAW514210−1.8590.0485major histocompatibility complex, class I, F
NBL1NM_005380−2.3700.0485neuroblastoma, suppression of tumorigenicity 1
CPNE2AW170571−2.8990.0485copine II
MAPRE3BG222594−3.5840.0485microtubule-associated protein, RP/EB family, member 3
(N.A.)M80469−1.9120.0493heavy chain; Human MHC class I HLA-J gene
RAD51CNM 002876−1.5900.0494RAD51 homologue C (S. cerevisiae)
  • NOTE: Genes chosen for validation (Table 3) and/or identified by pathway analysis (Table 4) are shown in bold.