Table 1.

Genes with homozygous deletions in 5% or more of cases

ChromosomeBandEnsembl IDGeneDescriptionNo. of cases
1p33, p32.3ENSG00000185104FAF1FAS-associated factor 1 (protein FAF1) (hFAF1)6
1p33, p32.3ENSG00000123080CDKN2CCyclin-dependent kinase 6 inhibitor (p18-INK6) (cyclin-dependent kinase 4 inhibitor C) (p18-INK4c)6
6q22.1, q22.31, q22.2ENSG00000196376SLC35F1Solute carrier family 35, member F14
6q24.2ENSG00000118491C6orf94UPF0418 protein C6orf94.4
6q25.1ENSG00000131016AKAP12A-kinase anchor protein 124
11q22.1, q22.3, q22.2ENSG00000023445BIRC3Baculoviral IAP repeat-containing protein 34
12p13.2ENSG00000139083ETV6Transcription factor ETV64
13q12.11ENSG00000150457LATS2Large tumor suppressor homologue 24
13q12.12ENSG00000027001MIPEPMitochondrial intermediate peptidase5
13q12.13ENSG00000132932ATP8A2Probable phospholipid-transporting ATPase IB12
13q13.3ENSG00000133083DCLK1Doublecortin-like and CAM kinase-like 113
13q13.3, q14.11ENSG00000183722LHFPLipoma HMGIC fusion partner precursor4
13q14.11ENSG00000133106EPSTI1Epithelial stromal interaction 1 isoform 24
13q14.3ENSG00000102837OLFM4Olfactomedin 4 precursor6
13q21.32ENSG00000184226PCDH9Protocadherin-9 precursor9
13q22.1ENSG00000118922KLF12Krueppel-like factor 1210
13q32.1ENSG00000125257ABCC4Multidrug resistance-associated protein 45
13q32.3ENSG00000125246CLYBLCitrate lyase β subunit-like protein, mitochondrial precursor5
13q32.3ENSG00000175198PCCAPropionyl-CoA carboxylase α chain6
13q33.1ENSG00000102466FGF14Fibroblast growth factor 148
13q34ENSG00000185989RASA3Ras GTPase-activating protein 34
14q24.2ENSG00000198732SMOC1SPARC-related modular calcium-binding protein 14
14q32.13, q32.12ENSG00000100600LGMNLegumain4
16q23.1ENSG00000186153WWOXWW domain-containing oxidoreductase6
16q24.1ENSG00000103187COTL1Coactosin-like protein6
16q24.3ENSG00000129993CBFA2T3Myeloid translocation gene-related protein 2 isoform MTG16b4
22q11.22ENSG00000211666IGLV2-14Immunoglobulin λ light chain V gene segment5
22q12.3ENSG00000133424LARGEGlycosyltransferase-like protein4
22q13.31ENSG00000093000NUP50Nucleoporin 50 kDa4